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The map label for this gene is yibD [C]

Identifier: 116623733

GI number: 116623733

Start: 5875844

End: 5876809

Strand: Direct

Name: yibD [C]

Synonym: Acid_4645

Alternate gene names: 116623733

Gene position: 5875844-5876809 (Clockwise)

Preceding gene: 116623732

Following gene: 116623734

Centisome position: 58.96

GC content: 57.66

Gene sequence:

>966_bases
ATGCTCGTCTCTATTCTAATACCGTGCTATAACGCCGAGCCCTGGATCGGGGAGGCAATCCGTAGCGCCCTGGACCAGGA
CTACGCGAACAAGGAAGTCATCGTAGTGGATGACGGATCGACCGACGGCAGCCTGGAAGTAATCCGAGGCTTCGGAGACC
GCATCACCTTTCAGCCGGGACCTCATGCCGGCGCTAATGCGGCGCGCAACCGGTTGACTGACCTCGCTCGCGGCGAATGG
CTCCAGTATCTCGATGCCGACGACTACCTGTTGCCTCAAAAATTAACATCGCAAGTCCAAATGCTTGGAGACGCTCAGGG
CATAGTCGACGTCATTTGCTCTCCTGTGATCTGCCACACGATCAATAGCGGTGCCGATCGGGTTCTGGCGATCAACCATG
CGGACGCAGCGCTGAACTTCATTAACTGGGGAATGCTGCAAACCACAGGGCTGCTCTTTCGACGGACGGCCGTTCTCGAA
GTGGGTGGTTGGAAGAACGATCAGCCGTGTTGTCAGGAGCACGAGTTATTGTTGCGCCTTCTGGTTGCAGGTGGACGCTT
CATCACCGGAAGCATTCCGGCCTCAGTGTACCGCGTCCACAGTGAGGGAACGGTATCGCGGAGAGATCCGCTGCGCGTCA
TCCGCATTCGAATGGAGCTAACGAACCGTCTAGTCCAATATCTGGACACGATCGGCAACCTGACTTCAGCCCATCGGAGT
GCGTTGTTTGTTGCGCGCATGGAGGCAGCGCGGAGCGCGTACGCCAAAGGCGACCAGCAATTGGCCGCGCAGCTATACGA
GAAGGCATGTGAGGTTCGGGTCGAGTGGCCAAGGGGATTGGCCGCACTGCCCTTCTCCTATCGCTGCGCGTTACAGATCC
TCGGCTTCAAACGTGCCGAACAGTTGGCAAGCCTCCAACGACGTTGGAGATCCTTTGGTAGCCCGTCCTTCTCCCAAAGC
CAATGA

Upstream 100 bases:

>100_bases
GTTGGAGACCCTCCAATATCCTGAACGATTTCGCCGGCCTAGAGAAATTGAAGCCGCGTTTCGCCCAATCTGCCCACTTC
CTTGGATGAGATAGAACGGC

Downstream 100 bases:

>100_bases
GCGCATCTCTGTGGACATGGGCAGAACGCCTGGAGGGGATACGTAGTCGCCTGCTCATTGGTCTCCTGCGGATGCACGGC
ATGAAAATCGGGGCCTCTTG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MLVSILIPCYNAEPWIGEAIRSALDQDYANKEVIVVDDGSTDGSLEVIRGFGDRITFQPGPHAGANAARNRLTDLARGEW
LQYLDADDYLLPQKLTSQVQMLGDAQGIVDVICSPVICHTINSGADRVLAINHADAALNFINWGMLQTTGLLFRRTAVLE
VGGWKNDQPCCQEHELLLRLLVAGGRFITGSIPASVYRVHSEGTVSRRDPLRVIRIRMELTNRLVQYLDTIGNLTSAHRS
ALFVARMEAARSAYAKGDQQLAAQLYEKACEVRVEWPRGLAALPFSYRCALQILGFKRAEQLASLQRRWRSFGSPSFSQS
Q

Sequences:

>Translated_321_residues
MLVSILIPCYNAEPWIGEAIRSALDQDYANKEVIVVDDGSTDGSLEVIRGFGDRITFQPGPHAGANAARNRLTDLARGEW
LQYLDADDYLLPQKLTSQVQMLGDAQGIVDVICSPVICHTINSGADRVLAINHADAALNFINWGMLQTTGLLFRRTAVLE
VGGWKNDQPCCQEHELLLRLLVAGGRFITGSIPASVYRVHSEGTVSRRDPLRVIRIRMELTNRLVQYLDTIGNLTSAHRS
ALFVARMEAARSAYAKGDQQLAAQLYEKACEVRVEWPRGLAALPFSYRCALQILGFKRAEQLASLQRRWRSFGSPSFSQS
Q
>Mature_321_residues
MLVSILIPCYNAEPWIGEAIRSALDQDYANKEVIVVDDGSTDGSLEVIRGFGDRITFQPGPHAGANAARNRLTDLARGEW
LQYLDADDYLLPQKLTSQVQMLGDAQGIVDVICSPVICHTINSGADRVLAINHADAALNFINWGMLQTTGLLFRRTAVLE
VGGWKNDQPCCQEHELLLRLLVAGGRFITGSIPASVYRVHSEGTVSRRDPLRVIRIRMELTNRLVQYLDTIGNLTSAHRS
ALFVARMEAARSAYAKGDQQLAAQLYEKACEVRVEWPRGLAALPFSYRCALQILGFKRAEQLASLQRRWRSFGSPSFSQS
Q

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=102, Percent_Identity=31.3725490196078, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35630; Mature: 35630

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSILIPCYNAEPWIGEAIRSALDQDYANKEVIVVDDGSTDGSLEVIRGFGDRITFQPG
CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEECCC
PHAGANAARNRLTDLARGEWLQYLDADDYLLPQKLTSQVQMLGDAQGIVDVICSPVICHT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCHHHHHH
INSGADRVLAINHADAALNFINWGMLQTTGLLFRRTAVLEVGGWKNDQPCCQEHELLLRL
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHH
LVAGGRFITGSIPASVYRVHSEGTVSRRDPLRVIRIRMELTNRLVQYLDTIGNLTSAHRS
HHHCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALFVARMEAARSAYAKGDQQLAAQLYEKACEVRVEWPRGLAALPFSYRCALQILGFKRAE
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEECCCCCEECCHHHHHHHHHHHHHHHH
QLASLQRRWRSFGSPSFSQSQ
HHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLVSILIPCYNAEPWIGEAIRSALDQDYANKEVIVVDDGSTDGSLEVIRGFGDRITFQPG
CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEECCC
PHAGANAARNRLTDLARGEWLQYLDADDYLLPQKLTSQVQMLGDAQGIVDVICSPVICHT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCHHHHHH
INSGADRVLAINHADAALNFINWGMLQTTGLLFRRTAVLEVGGWKNDQPCCQEHELLLRL
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHH
LVAGGRFITGSIPASVYRVHSEGTVSRRDPLRVIRIRMELTNRLVQYLDTIGNLTSAHRS
HHHCCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALFVARMEAARSAYAKGDQQLAAQLYEKACEVRVEWPRGLAALPFSYRCALQILGFKRAE
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEECCCCCEECCHHHHHHHHHHHHHHHH
QLASLQRRWRSFGSPSFSQSQ
HHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]