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The map label for this gene is yjbJ [H]

Identifier: 116623675

GI number: 116623675

Start: 5804337

End: 5804942

Strand: Reverse

Name: yjbJ [H]

Synonym: Acid_4587

Alternate gene names: 116623675

Gene position: 5804942-5804337 (Counterclockwise)

Preceding gene: 116623679

Following gene: 116623674

Centisome position: 58.25

GC content: 61.39

Gene sequence:

>606_bases
ATGGTCGTGAGTCCGAGAGCCGTCGCCGAAAAGCGCATTGCCGAGACCGTATTGCCCGCGCACGTGGTGGGCCCGGACAC
GCCTGCGCCCGCGGCACAGGAGCCCGCCGACCATGCTGCCGGAATCGATGCAGCGGTAGAGCGGATCGCGGCCGAACATT
CGCTGCCCCCGCAGTTGATCCACTCGGTGATTAAAGTAGAGAGCAACTACAATCCGCACGCGGTTTCAAATAAAGGCGCG
CTGGGGCTGATGCAGCTGATTCCCTCCACGGCGCGCCGGTTCGGCGTGAGCGACGCCTTCAATCCCATACAAAACATTCA
GGGGGGCGCCAAATATCTGCGCTACCTGCTGGATTTGTTCGATGGCAGCTATCCGCTGGCACTGGCCGCTTACAATGCGG
GCGAGGCCGCGGTGGCCCGGTATGGGGGAATTCCGCCGTATGCGGAAACCCAGAACTATGTAATTCTGGTACGCAAACAA
TTGGAAAAGGCAGCCGCTGCCGCCAAAGCCGCGCCGGCGCCGGCGATCGAGGCCAAAGAAACAGGTCCGGCGCATATTGT
CGAAGAAGTCCAAGCGGATGGTTCCGTGCGGTACGTCTCGAGGTAA

Upstream 100 bases:

>100_bases
TTTGACCGCCGGAGTCGTGTTTGGCGCCGGCACGGATCGGCCGCTGCGTATCACGAGCGTCGTGCGCTCCGATCCACGGA
CAGGTAAATTGGTGAGAAGC

Downstream 100 bases:

>100_bases
AGATAAGGCTCTATGAAGCTGATCGTCGCGCTCGCAATTTCTGTTACGACGTTGTTTGCGCAGAACGATCGCGCTTCCCT
GCTTTCGGTCACGGCCATCC

Product: lytic transglycosylase catalytic subunit subunit

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MVVSPRAVAEKRIAETVLPAHVVGPDTPAPAAQEPADHAAGIDAAVERIAAEHSLPPQLIHSVIKVESNYNPHAVSNKGA
LGLMQLIPSTARRFGVSDAFNPIQNIQGGAKYLRYLLDLFDGSYPLALAAYNAGEAAVARYGGIPPYAETQNYVILVRKQ
LEKAAAAAKAAPAPAIEAKETGPAHIVEEVQADGSVRYVSR

Sequences:

>Translated_201_residues
MVVSPRAVAEKRIAETVLPAHVVGPDTPAPAAQEPADHAAGIDAAVERIAAEHSLPPQLIHSVIKVESNYNPHAVSNKGA
LGLMQLIPSTARRFGVSDAFNPIQNIQGGAKYLRYLLDLFDGSYPLALAAYNAGEAAVARYGGIPPYAETQNYVILVRKQ
LEKAAAAAKAAPAPAIEAKETGPAHIVEEVQADGSVRYVSR
>Mature_201_residues
MVVSPRAVAEKRIAETVLPAHVVGPDTPAPAAQEPADHAAGIDAAVERIAAEHSLPPQLIHSVIKVESNYNPHAVSNKGA
LGLMQLIPSTARRFGVSDAFNPIQNIQGGAKYLRYLLDLFDGSYPLALAAYNAGEAAVARYGGIPPYAETQNYVILVRKQ
LEKAAAAAKAAPAPAIEAKETGPAHIVEEVQADGSVRYVSR

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 21176; Mature: 21176

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVSPRAVAEKRIAETVLPAHVVGPDTPAPAAQEPADHAAGIDAAVERIAAEHSLPPQLI
CCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
HSVIKVESNYNPHAVSNKGALGLMQLIPSTARRFGVSDAFNPIQNIQGGAKYLRYLLDLF
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
DGSYPLALAAYNAGEAAVARYGGIPPYAETQNYVILVRKQLEKAAAAAKAAPAPAIEAKE
CCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCC
TGPAHIVEEVQADGSVRYVSR
CCHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure
MVVSPRAVAEKRIAETVLPAHVVGPDTPAPAAQEPADHAAGIDAAVERIAAEHSLPPQLI
CCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
HSVIKVESNYNPHAVSNKGALGLMQLIPSTARRFGVSDAFNPIQNIQGGAKYLRYLLDLF
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
DGSYPLALAAYNAGEAAVARYGGIPPYAETQNYVILVRKQLEKAAAAAKAAPAPAIEAKE
CCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCC
TGPAHIVEEVQADGSVRYVSR
CCHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]