| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is xynC [H]
Identifier: 116623484
GI number: 116623484
Start: 5560996
End: 5563353
Strand: Direct
Name: xynC [H]
Synonym: Acid_4394
Alternate gene names: 116623484
Gene position: 5560996-5563353 (Clockwise)
Preceding gene: 116623482
Following gene: 116623485
Centisome position: 55.8
GC content: 61.03
Gene sequence:
>2358_bases ATGAAATCCAAATACAGCCGCGTCGCCATCCTCTTCTTGGCGGGAGTTTACCCGCTCTGTGCTCAACCGACAACAATTGT GCAGAATGACTGGGAAGACGGCACCTTACAGGGCTGGATTCCGCGTGGCGGCACTGTGGTGCTTACCAATTCCACCGAGG CAGCGCACGGCGGAACTCACAGCCTGAAGACGATTGGCCGCACCGCCGGCTTCAACGGTCCCAGCCTCAACGTGGTCGGC CTCCTCACCAGTGGCGCCACCTATCAGGTCACGGCGTCCGTCAGGCTCGTGGCCGGCACGCCGCCGACGCAGTTGAGTAT CACGGTGCAGCGGACAGTCAACGGGACCAATAGCTTCGATTCTGTGGCCCAAAGCTCCGCCACAGGCGTCACCGACAGTG CATGGACCACGCTTACCGGGCTCTATTCGTTCACCGGCGCCTCCCCTTCCGGTCTGTTGCTGTACATCGAATCGGCCAGC GCGACGGCGTCTTACTACGTGGACGATTTCAGCATCGTGCTGGTAGCCAATCCACCCGGACCGCCGCCGGATACCAACGG ACTCCTCACGGGTTTCGAAAGCGGCACCAGGGAGGGATGGACTCCGCGTATCGGCACCGAGGCGGTGAACCCCAGTTCTG CGGACGCGCACACGGGCACGTTCAGCCTGCTCACCACCGGACGCACCGCAGCTTTTCAGGGCCCAGCGATCAACGTAACG AACATCATGTTCAACGGCTCACGCTATGTGGTTTCGGTGTGGGCGAAGTTGGCGCCGGGCGAACCTACCAGCCAGTTGCG AGTCAGCCTGCAACGTAACATCGGATCAATGACCACCTTTCACACGGTGGTCGGTAACACGCAAGTTACTTCCGGCGCGT GGGTACACCTTTCCACCACATACGATTTTGCGCTCGCTAATTCATCGGTGACGTTGTATGTAGAGTCCGCCAGCGGAACT TCTTCCTTCTACATCGACGATGCTTCGATCACGTTTGTGCCGCCGCCCACGGTGGAAACCAACCTGGCCTCGCTGGGGCA GGTGCTCTCGCCTTACGTCTTCGTCGGGGCGGCGGTCAACGCCACCACCATTTCCGGCGTTCACGGCGACTTGTTGAGCA AGCACTTCAACAGCATCACGTCGGAAAACGACATGAAGTGGGATGCCACCGAAGCCAGCGAGGGGACGTTTACATTTGCG AACGCCGACGCGCAGGTGAACTTCGCCAAAGCGCACGGAATGCGGGTTCGCGGACACACGCTGGTGTGGCACAACCAGAT TCCGGCATGGGTCTTCACGGACCCCAACACCGGCACCACCATGACACCCTCGCCGCAGAATAAGGCGCTGCTGCTGCAGC GGCTGCGCAATCATATCCAGGGCCTGGTTACGCATTTCGGCACCGACGTCTACGCGTGGGATGTGGTCAACGAGGCGATC GACCCGGCGCAATCCGACTGCCTGCGGCGCAGCACCTGGTACACGATCACGGGCAAGGATTTTATCGATACGGCATTTCT TACGGCGCGCCAGTTCGCCCCGAATGCGAAGCTCTTCTACAACGACTTCAGCACTACCGATACCGGAAAGCGGCAGTGCA TCTTTAACCTGGTGGCAGATCTGAAAAGCCGCGGCATTCCGATCGATGCCGTGGGCCATCAGATGCACATCAACCTTAAC TATCCCGGCGTGCAGCCGGTTCTCGACACGGTTAACCAGATGGCGACTCTCGGCATAGATCAGCAGTTCACGGAGTTCGA TATCAGCGTCGGCACGAGCTTCACGGCTTACTCCGACATCCCGGCGTCGGTCTTCGCGCAGCAGGGCTACGAGTATCGCG ACTATCTGAATGCGGTCCGGCTGCTGCAAGGCAAACTCAGCTCCGTGACATTCTGGGGGATGGCTGACGACCATACGTGG CTGGACTCGGGCACGGTGGTGGATGCACCGCTGCCGTTCGACACGAGCCTGCACGCAAAGCCGGCCTACTGGGGAATGGC CGATCAGTCGCAGCTGCCGGGGATCGGGCTCACCGGCACGTTGGGCACGAAGGCCGGCCCGCAGAATGCGCGGGTCTGGC AGTTGACCTTCAGCAATGCCGGACCGGGCACGGCCCATGGCACGCGGCTTGCGGGCTTCACGCTGACGCAGACCTCCGGC GCGGCCTGCACGCCGGTAGTGAGCGCGGCGCTGCCCGCGGCGCTCGGCGACATCGGCGCCAATGGATCGGCAAGTACGAA TGTCACGATCGATTTCACCGGCTGTTCCGCGCTGGCACGGTTTTCGTTGAATGCGCCATTCAGTTCGTCCAATGGATGGA ATGCCGGCGCGATCATTCGCAATAACGAGTTCCGCTAA
Upstream 100 bases:
>100_bases GGTTGCAGCTTCGTTTTAAGCACTTAGTCAGACTGATTACACTTCCAGGTCTCTTCTGGATTGACCCCGCCTGACGATGC CTATATAGTTTGAGGCGCGA
Downstream 100 bases:
>100_bases TCGAGACACCCTATGAAACTGATCACGCTCACACTTGCCGGTCTGCTTGCCGCCTCCGCTCACGCCGCTCCGCTGTTGAA CCTCGACCCCATAAGCGGCA
Product: endo-1,4-beta-xylanase
Products: NA
Alternate protein names: Xylanase C; 1,4-beta-D-xylan xylanohydrolase C [H]
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MKSKYSRVAILFLAGVYPLCAQPTTIVQNDWEDGTLQGWIPRGGTVVLTNSTEAAHGGTHSLKTIGRTAGFNGPSLNVVG LLTSGATYQVTASVRLVAGTPPTQLSITVQRTVNGTNSFDSVAQSSATGVTDSAWTTLTGLYSFTGASPSGLLLYIESAS ATASYYVDDFSIVLVANPPGPPPDTNGLLTGFESGTREGWTPRIGTEAVNPSSADAHTGTFSLLTTGRTAAFQGPAINVT NIMFNGSRYVVSVWAKLAPGEPTSQLRVSLQRNIGSMTTFHTVVGNTQVTSGAWVHLSTTYDFALANSSVTLYVESASGT SSFYIDDASITFVPPPTVETNLASLGQVLSPYVFVGAAVNATTISGVHGDLLSKHFNSITSENDMKWDATEASEGTFTFA NADAQVNFAKAHGMRVRGHTLVWHNQIPAWVFTDPNTGTTMTPSPQNKALLLQRLRNHIQGLVTHFGTDVYAWDVVNEAI DPAQSDCLRRSTWYTITGKDFIDTAFLTARQFAPNAKLFYNDFSTTDTGKRQCIFNLVADLKSRGIPIDAVGHQMHINLN YPGVQPVLDTVNQMATLGIDQQFTEFDISVGTSFTAYSDIPASVFAQQGYEYRDYLNAVRLLQGKLSSVTFWGMADDHTW LDSGTVVDAPLPFDTSLHAKPAYWGMADQSQLPGIGLTGTLGTKAGPQNARVWQLTFSNAGPGTAHGTRLAGFTLTQTSG AACTPVVSAALPAALGDIGANGSASTNVTIDFTGCSALARFSLNAPFSSSNGWNAGAIIRNNEFR
Sequences:
>Translated_785_residues MKSKYSRVAILFLAGVYPLCAQPTTIVQNDWEDGTLQGWIPRGGTVVLTNSTEAAHGGTHSLKTIGRTAGFNGPSLNVVG LLTSGATYQVTASVRLVAGTPPTQLSITVQRTVNGTNSFDSVAQSSATGVTDSAWTTLTGLYSFTGASPSGLLLYIESAS ATASYYVDDFSIVLVANPPGPPPDTNGLLTGFESGTREGWTPRIGTEAVNPSSADAHTGTFSLLTTGRTAAFQGPAINVT NIMFNGSRYVVSVWAKLAPGEPTSQLRVSLQRNIGSMTTFHTVVGNTQVTSGAWVHLSTTYDFALANSSVTLYVESASGT SSFYIDDASITFVPPPTVETNLASLGQVLSPYVFVGAAVNATTISGVHGDLLSKHFNSITSENDMKWDATEASEGTFTFA NADAQVNFAKAHGMRVRGHTLVWHNQIPAWVFTDPNTGTTMTPSPQNKALLLQRLRNHIQGLVTHFGTDVYAWDVVNEAI DPAQSDCLRRSTWYTITGKDFIDTAFLTARQFAPNAKLFYNDFSTTDTGKRQCIFNLVADLKSRGIPIDAVGHQMHINLN YPGVQPVLDTVNQMATLGIDQQFTEFDISVGTSFTAYSDIPASVFAQQGYEYRDYLNAVRLLQGKLSSVTFWGMADDHTW LDSGTVVDAPLPFDTSLHAKPAYWGMADQSQLPGIGLTGTLGTKAGPQNARVWQLTFSNAGPGTAHGTRLAGFTLTQTSG AACTPVVSAALPAALGDIGANGSASTNVTIDFTGCSALARFSLNAPFSSSNGWNAGAIIRNNEFR >Mature_785_residues MKSKYSRVAILFLAGVYPLCAQPTTIVQNDWEDGTLQGWIPRGGTVVLTNSTEAAHGGTHSLKTIGRTAGFNGPSLNVVG LLTSGATYQVTASVRLVAGTPPTQLSITVQRTVNGTNSFDSVAQSSATGVTDSAWTTLTGLYSFTGASPSGLLLYIESAS ATASYYVDDFSIVLVANPPGPPPDTNGLLTGFESGTREGWTPRIGTEAVNPSSADAHTGTFSLLTTGRTAAFQGPAINVT NIMFNGSRYVVSVWAKLAPGEPTSQLRVSLQRNIGSMTTFHTVVGNTQVTSGAWVHLSTTYDFALANSSVTLYVESASGT SSFYIDDASITFVPPPTVETNLASLGQVLSPYVFVGAAVNATTISGVHGDLLSKHFNSITSENDMKWDATEASEGTFTFA NADAQVNFAKAHGMRVRGHTLVWHNQIPAWVFTDPNTGTTMTPSPQNKALLLQRLRNHIQGLVTHFGTDVYAWDVVNEAI DPAQSDCLRRSTWYTITGKDFIDTAFLTARQFAPNAKLFYNDFSTTDTGKRQCIFNLVADLKSRGIPIDAVGHQMHINLN YPGVQPVLDTVNQMATLGIDQQFTEFDISVGTSFTAYSDIPASVFAQQGYEYRDYLNAVRLLQGKLSSVTFWGMADDHTW LDSGTVVDAPLPFDTSLHAKPAYWGMADQSQLPGIGLTGTLGTKAGPQNARVWQLTFSNAGPGTAHGTRLAGFTLTQTSG AACTPVVSAALPAALGDIGANGSASTNVTIDFTGCSALARFSLNAPFSSSNGWNAGAIIRNNEFR
Specific function: Endoxylanase with high hydrolytic activity on birchwood and oat spelt xylan. Xylotetraose, xylotriose, xylobiose and xylose are the main products from birchwood xylan hydrolysis. Shows increasing activity on xylo-oligosaccharides of increasing length. Dis
COG id: COG3693
COG function: function code G; Beta-1,4-xylanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBM-cenC (cenC-type cellulose-binding) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010502 - InterPro: IPR008960 - InterPro: IPR015922 - InterPro: IPR003305 - InterPro: IPR008979 - InterPro: IPR001000 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02018 CBM_4_9; PF06452 DUF1083; PF00331 Glyco_hydro_10 [H]
EC number: =3.2.1.8 [H]
Molecular weight: Translated: 83422; Mature: 83422
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKYSRVAILFLAGVYPLCAQPTTIVQNDWEDGTLQGWIPRGGTVVLTNSTEAAHGGTH CCCCHHHEEEEEHHCCHHHHCCCCEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCH SLKTIGRTAGFNGPSLNVVGLLTSGATYQVTASVRLVAGTPPTQLSITVQRTVNGTNSFD HHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCHH SVAQSSATGVTDSAWTTLTGLYSFTGASPSGLLLYIESASATASYYVDDFSIVLVANPPG HHHHHCCCCCCCCHHHHHHHHHEECCCCCCCEEEEEECCCCCEEEEEECEEEEEEECCCC PPPDTNGLLTGFESGTREGWTPRIGTEAVNPSSADAHTGTFSLLTTGRTAAFQGPAINVT CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCEEEE NIMFNGSRYVVSVWAKLAPGEPTSQLRVSLQRNIGSMTTFHTVVGNTQVTSGAWVHLSTT EEEECCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCEECCCEEEEEEEE YDFALANSSVTLYVESASGTSSFYIDDASITFVPPPTVETNLASLGQVLSPYVFVGAAVN EEEEEECCEEEEEEECCCCCCEEEEECCEEEEECCCCCCCCHHHHHHHHCCEEEEEEEEC ATTISGVHGDLLSKHFNSITSENDMKWDATEASEGTFTFANADAQVNFAKAHGMRVRGHT CEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEECCCCEEEEEHHCCEEEECCE LVWHNQIPAWVFTDPNTGTTMTPSPQNKALLLQRLRNHIQGLVTHFGTDVYAWDVVNEAI EEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC DPAQSDCLRRSTWYTITGKDFIDTAFLTARQFAPNAKLFYNDFSTTDTGKRQCIFNLVAD CCHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH LKSRGIPIDAVGHQMHINLNYPGVQPVLDTVNQMATLGIDQQFTEFDISVGTSFTAYSDI HHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEECCC PASVFAQQGYEYRDYLNAVRLLQGKLSSVTFWGMADDHTWLDSGTVVDAPLPFDTSLHAK CHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCEEECCCCCCCCCCCC PAYWGMADQSQLPGIGLTGTLGTKAGPQNARVWQLTFSNAGPGTAHGTRLAGFTLTQTSG CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCC AACTPVVSAALPAALGDIGANGSASTNVTIDFTGCSALARFSLNAPFSSSNGWNAGAIIR CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEHEEECCCCCCCCCCCCCEEEEE NNEFR CCCCC >Mature Secondary Structure MKSKYSRVAILFLAGVYPLCAQPTTIVQNDWEDGTLQGWIPRGGTVVLTNSTEAAHGGTH CCCCHHHEEEEEHHCCHHHHCCCCEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCH SLKTIGRTAGFNGPSLNVVGLLTSGATYQVTASVRLVAGTPPTQLSITVQRTVNGTNSFD HHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCHH SVAQSSATGVTDSAWTTLTGLYSFTGASPSGLLLYIESASATASYYVDDFSIVLVANPPG HHHHHCCCCCCCCHHHHHHHHHEECCCCCCCEEEEEECCCCCEEEEEECEEEEEEECCCC PPPDTNGLLTGFESGTREGWTPRIGTEAVNPSSADAHTGTFSLLTTGRTAAFQGPAINVT CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCEEEE NIMFNGSRYVVSVWAKLAPGEPTSQLRVSLQRNIGSMTTFHTVVGNTQVTSGAWVHLSTT EEEECCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCEECCCEEEEEEEE YDFALANSSVTLYVESASGTSSFYIDDASITFVPPPTVETNLASLGQVLSPYVFVGAAVN EEEEEECCEEEEEEECCCCCCEEEEECCEEEEECCCCCCCCHHHHHHHHCCEEEEEEEEC ATTISGVHGDLLSKHFNSITSENDMKWDATEASEGTFTFANADAQVNFAKAHGMRVRGHT CEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEECCCCEEEEEHHCCEEEECCE LVWHNQIPAWVFTDPNTGTTMTPSPQNKALLLQRLRNHIQGLVTHFGTDVYAWDVVNEAI EEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC DPAQSDCLRRSTWYTITGKDFIDTAFLTARQFAPNAKLFYNDFSTTDTGKRQCIFNLVAD CCHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH LKSRGIPIDAVGHQMHINLNYPGVQPVLDTVNQMATLGIDQQFTEFDISVGTSFTAYSDI HHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEECCC PASVFAQQGYEYRDYLNAVRLLQGKLSSVTFWGMADDHTWLDSGTVVDAPLPFDTSLHAK CHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCEEECCCCCCCCCCCC PAYWGMADQSQLPGIGLTGTLGTKAGPQNARVWQLTFSNAGPGTAHGTRLAGFTLTQTSG CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCC AACTPVVSAALPAALGDIGANGSASTNVTIDFTGCSALARFSLNAPFSSSNGWNAGAIIR CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEHEEECCCCCCCCCCCCCEEEEE NNEFR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10463183 [H]