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The map label for this gene is arnC [H]

Identifier: 116623450

GI number: 116623450

Start: 5524617

End: 5525327

Strand: Reverse

Name: arnC [H]

Synonym: Acid_4359

Alternate gene names: 116623450

Gene position: 5525327-5524617 (Counterclockwise)

Preceding gene: 116623451

Following gene: 116623447

Centisome position: 55.44

GC content: 59.63

Gene sequence:

>711_bases
TTGAAAGCCATCGCCGTCGTTCCGACCTATAACGAAATTGAGAACCTGCCGCGCATAGTGGAATTGATCCGGGCACAGCC
CGGTGGCTGGCACATCCTTGTGGTGGACGATGGATCGCCCGATGGGACCGGACGGCTGGCCGACGAATTGAGCGCGCGAT
ACGCGGGCGAATTGTTCGTGCTTCACCGGACGAAAAAAGAGGGCCTCGGCCGCGCCTACGTGGCGGGTTTTCAGTGGGTG
CTGGCCAGGCCGGATTACGAAGTGATCGTCCAGATGGATGCCGACCTCTCGCACGATCCCGAGTATCTGACGCCAATGGC
GGAGATGCTCAAGGAGCACGACCTGGTGCTGGGCTCGCGCTACCTGAACGGCATCAGCGTAGTGAATTGGGATTTCAAAC
GCCTGCTGCTCAGCAAAGGAGCCAGCGTTTATGTGCGCATGATAACCGGCATGCCCTACTCCGACGCAACCGGCGGCTAC
AAGGCCTGGCGGCGGAACGCCCTGGCGGCGGTCGGGCTGGATCAATTATTTTCCAACGGCTACCTGTTTCAGATCGAGAC
CACCTACCGGCTGCACCGGTTGAAGAAGTATTCCATCGGGCAGACTTCGATCATTTTCCGCGACCGCGACCTGGGACGTT
CCAAAATCGACATGCCGATTATTCTGGAAGCGGTCTGGGGAGTGATCCGGCTCCGGCTGACGGGCCGTTAG

Upstream 100 bases:

>100_bases
ACGGCGTCGCTCTGGACGTTGTCGAACTAGAGCATGTCAGGAATCGTCGCGCGTTCGGCAGAGGGACGCCTATAATGTTA
TGTGCGTCTAAAGGGGACAC

Downstream 100 bases:

>100_bases
TTCACAGGGCGGAAAAATTCGACTTCGCAGCGATTGGAGTAGGAGCCAAGGCCCGATTCAAAGCTGATCGAGTCCACCCC
GCAGGCCGGCGGCCGGTCGG

Product: dolichyl-phosphate beta-D-mannosyltransferase

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKAIAVVPTYNEIENLPRIVELIRAQPGGWHILVVDDGSPDGTGRLADELSARYAGELFVLHRTKKEGLGRAYVAGFQWV
LARPDYEVIVQMDADLSHDPEYLTPMAEMLKEHDLVLGSRYLNGISVVNWDFKRLLLSKGASVYVRMITGMPYSDATGGY
KAWRRNALAAVGLDQLFSNGYLFQIETTYRLHRLKKYSIGQTSIIFRDRDLGRSKIDMPIILEAVWGVIRLRLTGR

Sequences:

>Translated_236_residues
MKAIAVVPTYNEIENLPRIVELIRAQPGGWHILVVDDGSPDGTGRLADELSARYAGELFVLHRTKKEGLGRAYVAGFQWV
LARPDYEVIVQMDADLSHDPEYLTPMAEMLKEHDLVLGSRYLNGISVVNWDFKRLLLSKGASVYVRMITGMPYSDATGGY
KAWRRNALAAVGLDQLFSNGYLFQIETTYRLHRLKKYSIGQTSIIFRDRDLGRSKIDMPIILEAVWGVIRLRLTGR
>Mature_236_residues
MKAIAVVPTYNEIENLPRIVELIRAQPGGWHILVVDDGSPDGTGRLADELSARYAGELFVLHRTKKEGLGRAYVAGFQWV
LARPDYEVIVQMDADLSHDPEYLTPMAEMLKEHDLVLGSRYLNGISVVNWDFKRLLLSKGASVYVRMITGMPYSDATGGY
KAWRRNALAAVGLDQLFSNGYLFQIETTYRLHRLKKYSIGQTSIIFRDRDLGRSKIDMPIILEAVWGVIRLRLTGR

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=240, Percent_Identity=37.5, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI71999402, Length=231, Percent_Identity=35.4978354978355, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6325441, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24585265, Length=236, Percent_Identity=36.4406779661017, Blast_Score=130, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 26700; Mature: 26700

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIAVVPTYNEIENLPRIVELIRAQPGGWHILVVDDGSPDGTGRLADELSARYAGELFV
CCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCEEEE
LHRTKKEGLGRAYVAGFQWVLARPDYEVIVQMDADLSHDPEYLTPMAEMLKEHDLVLGSR
EEECCCCCCCHHHHHCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEHHH
YLNGISVVNWDFKRLLLSKGASVYVRMITGMPYSDATGGYKAWRRNALAAVGLDQLFSNG
HHCCEEEECHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHCCHHHHCHHHHHCCC
YLFQIETTYRLHRLKKYSIGQTSIIFRDRDLGRSKIDMPIILEAVWGVIRLRLTGR
EEEEEECHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEECC
>Mature Secondary Structure
MKAIAVVPTYNEIENLPRIVELIRAQPGGWHILVVDDGSPDGTGRLADELSARYAGELFV
CCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCEEEE
LHRTKKEGLGRAYVAGFQWVLARPDYEVIVQMDADLSHDPEYLTPMAEMLKEHDLVLGSR
EEECCCCCCCHHHHHCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEHHH
YLNGISVVNWDFKRLLLSKGASVYVRMITGMPYSDATGGYKAWRRNALAAVGLDQLFSNG
HHCCEEEECHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHCCHHHHCHHHHHCCC
YLFQIETTYRLHRLKKYSIGQTSIIFRDRDLGRSKIDMPIILEAVWGVIRLRLTGR
EEEEEECHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA