Definition Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession NC_008536
Length 9,965,640

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The map label for this gene is ykvO [H]

Identifier: 116623355

GI number: 116623355

Start: 5396611

End: 5397360

Strand: Reverse

Name: ykvO [H]

Synonym: Acid_4264

Alternate gene names: 116623355

Gene position: 5397360-5396611 (Counterclockwise)

Preceding gene: 116623356

Following gene: 116623352

Centisome position: 54.16

GC content: 64.4

Gene sequence:

>750_bases
ATGAAGAGACTGGATGGGAAGCGCGCTTTGATTACCGGGGGGACGACCGGGATTGGATTGGAAACGGCGCGCCTCTTCAT
GGAGGAAGGCGCGCGGGTCGCAATCACCGGAAAGAACCCCGCGACATTGGAGGCGGCGCGCAAGGAGCTTGGCGGCGACG
TGCTGGTGATCGCGTCGGACGCGAGCGACGGGGCGGCGCAGAAGGCGGTGGGGGAGGAGATTCGCCGGGAATTTGGCGGA
CTGGACGCCCTGTTCGTGAATGCGGGCAGCGCCGATTTGCGGCCCGTGGAGCAGTGGGACGAGGTGGGCTTCGACCGCTC
GATCGCGCTCAACCTGAAGGGTCCGTATTTCCTGATTCAGGCGCTGTTACCGGTGTTCGCGAACCCCGCGTCGATCGTGA
TGAACGGCTCGGTGAATGCGCACATCGGAATGGCGAACACGAGCGTGTACGCAGCGACCAAAGCCGCGCTGATATCGCTG
GTGCGGACGCTCTCCGGGGAGTTGATCGGGCGTGGGATCCGGGTGAACGCGGTCAGTCCCGGGCCGGTGACGACGCCGCT
TTACGGCAAGCTGGGCTTATCGGAGACGGATCTCAAGAGTGTGTCGGCATCGATCCGGAGCCAGGTGCCGGCGGGGAGAT
TCGCGAACCCGAGGGAGATCGCGCTGGCGGTGCTTTACCTGGCGTCGGACGAATCCGCGTTCATGGTTGGAGGCGAGATG
ATGATCGACGGGGGAATGGGCAACGTGTGA

Upstream 100 bases:

>100_bases
ATACGGTAATCCCGCTAAGTTGGGCGGCGGAAGCTTATACAGGGCAGTTGACGCGGAGCGGGCGAGGGAGAGTGGTGGTG
GCGATAGAAAAGAGTGAACG

Downstream 100 bases:

>100_bases
TCATTCCGGCGGCGCAAAGTAGCCGCGGCGCCAGAAGAGGTGGAGCGCTTTGAGCAGGGGCGATGAGGTAAGTTCGACGC
GCACTTTGCGGAACTTACCA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKRLDGKRALITGGTTGIGLETARLFMEEGARVAITGKNPATLEAARKELGGDVLVIASDASDGAAQKAVGEEIRREFGG
LDALFVNAGSADLRPVEQWDEVGFDRSIALNLKGPYFLIQALLPVFANPASIVMNGSVNAHIGMANTSVYAATKAALISL
VRTLSGELIGRGIRVNAVSPGPVTTPLYGKLGLSETDLKSVSASIRSQVPAGRFANPREIALAVLYLASDESAFMVGGEM
MIDGGMGNV

Sequences:

>Translated_249_residues
MKRLDGKRALITGGTTGIGLETARLFMEEGARVAITGKNPATLEAARKELGGDVLVIASDASDGAAQKAVGEEIRREFGG
LDALFVNAGSADLRPVEQWDEVGFDRSIALNLKGPYFLIQALLPVFANPASIVMNGSVNAHIGMANTSVYAATKAALISL
VRTLSGELIGRGIRVNAVSPGPVTTPLYGKLGLSETDLKSVSASIRSQVPAGRFANPREIALAVLYLASDESAFMVGGEM
MIDGGMGNV
>Mature_249_residues
MKRLDGKRALITGGTTGIGLETARLFMEEGARVAITGKNPATLEAARKELGGDVLVIASDASDGAAQKAVGEEIRREFGG
LDALFVNAGSADLRPVEQWDEVGFDRSIALNLKGPYFLIQALLPVFANPASIVMNGSVNAHIGMANTSVYAATKAALISL
VRTLSGELIGRGIRVNAVSPGPVTTPLYGKLGLSETDLKSVSASIRSQVPAGRFANPREIALAVLYLASDESAFMVGGEM
MIDGGMGNV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=35.0806451612903, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=35.0877192982456, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=30.8943089430894, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=30.8943089430894, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=28.4615384615385, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=27.1653543307087, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=31.2252964426877, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=27.4900398406374, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=25.4901960784314, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=30.7291666666667, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=31.5789473684211, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=25.0996015936255, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=33.596837944664, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=31.6, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=34, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=31.8548387096774, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=29.0322580645161, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=32, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.4552845528455, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=30.2788844621514, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=27.6, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=25.6916996047431, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=29.4354838709677, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=30.5084745762712, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786701, Length=193, Percent_Identity=29.0155440414508, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=31.6602316602317, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=33.0827067669173, Blast_Score=116, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=32.9501915708812, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=32.0610687022901, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=32.8301886792453, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=32.5757575757576, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=32.5757575757576, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=32.0610687022901, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17563726, Length=273, Percent_Identity=31.1355311355311, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=32.9501915708812, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=31.4176245210728, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=29.3436293436293, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=31.2977099236641, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.0836653386454, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=32.6530612244898, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=32.319391634981, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=29.6, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=260, Percent_Identity=31.1538461538462, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.4176245210728, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=29.1828793774319, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=31.2977099236641, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=31.8897637795276, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=28.6259541984733, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=29.0076335877863, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=28.3524904214559, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=261, Percent_Identity=29.5019157088123, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=27.8884462151394, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=29.0196078431373, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=24.2914979757085, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=25.6281407035176, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6322227, Length=240, Percent_Identity=27.5, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=32.258064516129, Blast_Score=114, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=33.0578512396694, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=30.4878048780488, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=30.5882352941176, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24639444, Length=258, Percent_Identity=31.7829457364341, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=28.4, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=27.4900398406374, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644337, Length=247, Percent_Identity=28.3400809716599, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24647946, Length=260, Percent_Identity=25.7692307692308, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45553409, Length=259, Percent_Identity=25.8687258687259, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24647948, Length=259, Percent_Identity=25.8687258687259, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=30.0578034682081, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25918; Mature: 25918

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MKRLDGKRALITGGTTGIGLETARLFMEEGARVAITGKNPATLEAARKELGGDVLVIASD
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEC
ASDGAAQKAVGEEIRREFGGLDALFVNAGSADLRPVEQWDEVGFDRSIALNLKGPYFLIQ
CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCCEEEEEECCHHHHHH
ALLPVFANPASIVMNGSVNAHIGMANTSVYAATKAALISLVRTLSGELIGRGIRVNAVSP
HHHHHHCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
GPVTTPLYGKLGLSETDLKSVSASIRSQVPAGRFANPREIALAVLYLASDESAFMVGGEM
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEECCCCEEEECCEE
MIDGGMGNV
EEECCCCCC
>Mature Secondary Structure
MKRLDGKRALITGGTTGIGLETARLFMEEGARVAITGKNPATLEAARKELGGDVLVIASD
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEC
ASDGAAQKAVGEEIRREFGGLDALFVNAGSADLRPVEQWDEVGFDRSIALNLKGPYFLIQ
CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCCEEEEEECCHHHHHH
ALLPVFANPASIVMNGSVNAHIGMANTSVYAATKAALISLVRTLSGELIGRGIRVNAVSP
HHHHHHCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
GPVTTPLYGKLGLSETDLKSVSASIRSQVPAGRFANPREIALAVLYLASDESAFMVGGEM
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEECCCCEEEECCEE
MIDGGMGNV
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]