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The map label for this gene is ccmF [H]

Identifier: 116623323

GI number: 116623323

Start: 5359594

End: 5361606

Strand: Direct

Name: ccmF [H]

Synonym: Acid_4232

Alternate gene names: 116623323

Gene position: 5359594-5361606 (Clockwise)

Preceding gene: 116623322

Following gene: 116623324

Centisome position: 53.78

GC content: 60.51

Gene sequence:

>2013_bases
ATGGAAAATCTGGGTTCGCTGGCCATACTGCTGGCCTTGTGTGTCGCGTTCTATGCCACCGTGGCCAGCGTGGTGGGACG
CATTAAGCGCAAGCCTTTTCTGATAGTTAGCGGGGAACGTGCGGTCTACGCCATATGGGCGCTGATCACCACCGCCTCGG
CCATCCTGGTTTACGCCCTGATGACCAGCGACTTCCGGTTTTCCTACGTGGCGGAGCACTCCAACCGCACCATGCCGCTG
CTTTATAAGTACGCGGCCTGGTGGGGCGGACAGGAAGGCTCGCTGCTCTTGTGGAGCTGGCTGCTCTCCACCTACACGAT
GGTCGTGGTCTTCACCAACCGGCGCAAGCTGCGCGACATGATGCCGTGGGTGATCGGCGTAATGACCACCATCCAGACGT
TCTTCCTGGTGCTCAACAACTTCATCGCGAATCCCTTCCAGATGCTGGCAGTGGATAAGCTGATCACGGCGGTGCCGGAC
GGCAACGGGCTGAGTCCGCTGCTGCAATACCCGGCGATGGCGATCCATCCGCCGATGCTGTACCTGGGCTATGTCGGCTT
CTCGGTGCCGTTCGCATTCGCGATCGGCTCCTTGATCACGCGGCAGCCGGGCGATTCCTGGATCCACACGACGCGGCGCT
GGACGCTGGTCACGTGGCTGTTCCAAAGCACCGGGATCATGCTGGGCGCGGCGTGGGCTTACCACGTGCTCGGCTGGGGC
GGCTACTGGGGCTGGGATCCGGTGGAGAATGCTTCGCTGCTCCCCTGGCTCAGCGGCACGGCGTTTCTGCACTCGGTGAT
GATGCAGGAAAAGAAGGGCATGATGAAGGTCTGGAACATCGTGCTGGTTTCCACCACCTTCTTCCTGTGCATTCTGGGCA
CCTTCCTGACGCGGAGCGGCGTGGTGCAATCGGTGCACGCGTTCGCGCGGTCGGAAATCGGAAAGTACTTCGTGGGCTTC
ATGGCGATCGGGATCGCGGCGGTGATCTTCCTGATCCTGGACCGGCTGGATTACCTGAAGAGCGAGGCGCAGCTGGAAAG
CGTGATCTCGCGCGAATCGAGCTTCCTGTTCAACAACCTGATCCTGCTGGCAAGCTGCTTCGCGGTACTGTGGGGCACGC
TGTTCCCAGTAATCAGCGAGGCGCTGACCGGCGATAAAATCTCGCTGGACGCCGATTGGTACAACCGGCTGATGGTGCCG
ATCGGGCTGTTCCTGCTGTTCCTGACGGGAGTGGGTCCGCTGTTCGCCTGGCGGCGCACGTCGGCGGAGAGCCTGCGGCG
CAACTTCCAGATTCCGGGCATCGCGGCACTGGTGCTGGTGGGCGCGTTGATGGTGGCCGGAGTGCGCCACTTCTACGCGC
TGATCTCGTTCGGCTTTTGTATGTTCGTGGCGCTGACGGTGCTGATCGAATTCTACAAGGGCGCGAAATCGATCGCGGCC
AAGAATTCGATGAACATCCTCCACGCGACGTGGGAGCTGACGCATCGCAATACGCGGCGCTACGGCGGATACCTGGTGCA
TATGGGAATCGTGCTGGCGTTCATCGGCTTCACTGGTCACGCCTTCAACCTGGCCGAGGTGAAGGAGCTGAATACCGGCG
ACACGATGAAGATCGGCACCTACGAACTGCGCATGGTCAACCTGGCGCAGGGCGATGAAGAGAATTACGCCTGGCATCGC
GCCACCATGCTGGTGACCAAGAACGGCGAGACGCTGGGAACACTGGAGCCGGAAAAGCGCTTCTACAAAGCGAGCAAACA
GGGCACCAGCGAAGTGGGGATCCGCGTGCGGCCCAACGAAGACCTGTACCTGAATTTCGGCGGCATGAGCGACGACAATC
AGCGCGCGGTGATTCAGGCCTACGTATTCCCGCTGGTGTCGTGGATTTGGATCGGGACGCTGGTGGTGATTTTCGGGACC
CTGATCTGCCTGGTTCCGAGCAAAGTCAAAATGCAATATGCCCGCACGGAAGTGGTGGGGTACACGAAGAAAAATGCGAC
GGTTCAGAAGTAG

Upstream 100 bases:

>100_bases
GTGCGCATCGAAGTACGAAGCCAAACCGGGGCAGCTCGCCCCGGGCAAAAACGCTCCCAATATCAACACGGGCAAAGCAA
GCATCTAGCTAGAGGGTGAT

Downstream 100 bases:

>100_bases
CATCCTGGCTCTCTTGATCGCGGTGGCGGCGCTGGCACAGACGGCCAGTGAGAAGCCCTCGGTGGACACCCGCCGGGTGG
GCGCGCGCCTGCAATGCCAG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MENLGSLAILLALCVAFYATVASVVGRIKRKPFLIVSGERAVYAIWALITTASAILVYALMTSDFRFSYVAEHSNRTMPL
LYKYAAWWGGQEGSLLLWSWLLSTYTMVVVFTNRRKLRDMMPWVIGVMTTIQTFFLVLNNFIANPFQMLAVDKLITAVPD
GNGLSPLLQYPAMAIHPPMLYLGYVGFSVPFAFAIGSLITRQPGDSWIHTTRRWTLVTWLFQSTGIMLGAAWAYHVLGWG
GYWGWDPVENASLLPWLSGTAFLHSVMMQEKKGMMKVWNIVLVSTTFFLCILGTFLTRSGVVQSVHAFARSEIGKYFVGF
MAIGIAAVIFLILDRLDYLKSEAQLESVISRESSFLFNNLILLASCFAVLWGTLFPVISEALTGDKISLDADWYNRLMVP
IGLFLLFLTGVGPLFAWRRTSAESLRRNFQIPGIAALVLVGALMVAGVRHFYALISFGFCMFVALTVLIEFYKGAKSIAA
KNSMNILHATWELTHRNTRRYGGYLVHMGIVLAFIGFTGHAFNLAEVKELNTGDTMKIGTYELRMVNLAQGDEENYAWHR
ATMLVTKNGETLGTLEPEKRFYKASKQGTSEVGIRVRPNEDLYLNFGGMSDDNQRAVIQAYVFPLVSWIWIGTLVVIFGT
LICLVPSKVKMQYARTEVVGYTKKNATVQK

Sequences:

>Translated_670_residues
MENLGSLAILLALCVAFYATVASVVGRIKRKPFLIVSGERAVYAIWALITTASAILVYALMTSDFRFSYVAEHSNRTMPL
LYKYAAWWGGQEGSLLLWSWLLSTYTMVVVFTNRRKLRDMMPWVIGVMTTIQTFFLVLNNFIANPFQMLAVDKLITAVPD
GNGLSPLLQYPAMAIHPPMLYLGYVGFSVPFAFAIGSLITRQPGDSWIHTTRRWTLVTWLFQSTGIMLGAAWAYHVLGWG
GYWGWDPVENASLLPWLSGTAFLHSVMMQEKKGMMKVWNIVLVSTTFFLCILGTFLTRSGVVQSVHAFARSEIGKYFVGF
MAIGIAAVIFLILDRLDYLKSEAQLESVISRESSFLFNNLILLASCFAVLWGTLFPVISEALTGDKISLDADWYNRLMVP
IGLFLLFLTGVGPLFAWRRTSAESLRRNFQIPGIAALVLVGALMVAGVRHFYALISFGFCMFVALTVLIEFYKGAKSIAA
KNSMNILHATWELTHRNTRRYGGYLVHMGIVLAFIGFTGHAFNLAEVKELNTGDTMKIGTYELRMVNLAQGDEENYAWHR
ATMLVTKNGETLGTLEPEKRFYKASKQGTSEVGIRVRPNEDLYLNFGGMSDDNQRAVIQAYVFPLVSWIWIGTLVVIFGT
LICLVPSKVKMQYARTEVVGYTKKNATVQK
>Mature_670_residues
MENLGSLAILLALCVAFYATVASVVGRIKRKPFLIVSGERAVYAIWALITTASAILVYALMTSDFRFSYVAEHSNRTMPL
LYKYAAWWGGQEGSLLLWSWLLSTYTMVVVFTNRRKLRDMMPWVIGVMTTIQTFFLVLNNFIANPFQMLAVDKLITAVPD
GNGLSPLLQYPAMAIHPPMLYLGYVGFSVPFAFAIGSLITRQPGDSWIHTTRRWTLVTWLFQSTGIMLGAAWAYHVLGWG
GYWGWDPVENASLLPWLSGTAFLHSVMMQEKKGMMKVWNIVLVSTTFFLCILGTFLTRSGVVQSVHAFARSEIGKYFVGF
MAIGIAAVIFLILDRLDYLKSEAQLESVISRESSFLFNNLILLASCFAVLWGTLFPVISEALTGDKISLDADWYNRLMVP
IGLFLLFLTGVGPLFAWRRTSAESLRRNFQIPGIAALVLVGALMVAGVRHFYALISFGFCMFVALTVLIEFYKGAKSIAA
KNSMNILHATWELTHRNTRRYGGYLVHMGIVLAFIGFTGHAFNLAEVKELNTGDTMKIGTYELRMVNLAQGDEENYAWHR
ATMLVTKNGETLGTLEPEKRFYKASKQGTSEVGIRVRPNEDLYLNFGGMSDDNQRAVIQAYVFPLVSWIWIGTLVVIFGT
LICLVPSKVKMQYARTEVVGYTKKNATVQK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=660, Percent_Identity=34.5454545454545, Blast_Score=338, Evalue=8e-94,
Organism=Escherichia coli, GI1790511, Length=392, Percent_Identity=35.4591836734694, Blast_Score=201, Evalue=9e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 75054; Mature: 75054

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLGSLAILLALCVAFYATVASVVGRIKRKPFLIVSGERAVYAIWALITTASAILVYAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
MTSDFRFSYVAEHSNRTMPLLYKYAAWWGGQEGSLLLWSWLLSTYTMVVVFTNRRKLRDM
HHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEECCHHHHHH
MPWVIGVMTTIQTFFLVLNNFIANPFQMLAVDKLITAVPDGNGLSPLLQYPAMAIHPPML
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHCCCHHH
YLGYVGFSVPFAFAIGSLITRQPGDSWIHTTRRWTLVTWLFQSTGIMLGAAWAYHVLGWG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
GYWGWDPVENASLLPWLSGTAFLHSVMMQEKKGMMKVWNIVLVSTTFFLCILGTFLTRSG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVQSVHAFARSEIGKYFVGFMAIGIAAVIFLILDRLDYLKSEAQLESVISRESSFLFNNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLASCFAVLWGTLFPVISEALTGDKISLDADWYNRLMVPIGLFLLFLTGVGPLFAWRRT
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
SAESLRRNFQIPGIAALVLVGALMVAGVRHFYALISFGFCMFVALTVLIEFYKGAKSIAA
CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNSMNILHATWELTHRNTRRYGGYLVHMGIVLAFIGFTGHAFNLAEVKELNTGDTMKIGT
CCCCEEEEEEEHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEECC
YELRMVNLAQGDEENYAWHRATMLVTKNGETLGTLEPEKRFYKASKQGTSEVGIRVRPNE
EEEEEEEECCCCCCCCEEEEEEEEEEECCCEECCCCHHHHHHHHHCCCCCCCCEEECCCC
DLYLNFGGMSDDNQRAVIQAYVFPLVSWIWIGTLVVIFGTLICLVPSKVKMQYARTEVVG
CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHE
YTKKNATVQK
EECCCCCCCC
>Mature Secondary Structure
MENLGSLAILLALCVAFYATVASVVGRIKRKPFLIVSGERAVYAIWALITTASAILVYAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
MTSDFRFSYVAEHSNRTMPLLYKYAAWWGGQEGSLLLWSWLLSTYTMVVVFTNRRKLRDM
HHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEECCHHHHHH
MPWVIGVMTTIQTFFLVLNNFIANPFQMLAVDKLITAVPDGNGLSPLLQYPAMAIHPPML
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHCCCHHH
YLGYVGFSVPFAFAIGSLITRQPGDSWIHTTRRWTLVTWLFQSTGIMLGAAWAYHVLGWG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
GYWGWDPVENASLLPWLSGTAFLHSVMMQEKKGMMKVWNIVLVSTTFFLCILGTFLTRSG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVQSVHAFARSEIGKYFVGFMAIGIAAVIFLILDRLDYLKSEAQLESVISRESSFLFNNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLASCFAVLWGTLFPVISEALTGDKISLDADWYNRLMVPIGLFLLFLTGVGPLFAWRRT
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
SAESLRRNFQIPGIAALVLVGALMVAGVRHFYALISFGFCMFVALTVLIEFYKGAKSIAA
CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNSMNILHATWELTHRNTRRYGGYLVHMGIVLAFIGFTGHAFNLAEVKELNTGDTMKIGT
CCCCEEEEEEEHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEECC
YELRMVNLAQGDEENYAWHRATMLVTKNGETLGTLEPEKRFYKASKQGTSEVGIRVRPNE
EEEEEEEECCCCCCCCEEEEEEEEEEECCCEECCCCHHHHHHHHHCCCCCCCCEEECCCC
DLYLNFGGMSDDNQRAVIQAYVFPLVSWIWIGTLVVIFGTLICLVPSKVKMQYARTEVVG
CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHE
YTKKNATVQK
EECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]