Click here to switch to the map view.

The map label for this gene is yfiH [H]

Identifier: 116623170

GI number: 116623170

Start: 5178665

End: 5179633

Strand: Reverse

Name: yfiH [H]

Synonym: Acid_4076

Alternate gene names: 116623170

Gene position: 5179633-5178665 (Counterclockwise)

Preceding gene: 116623171

Following gene: 116623168

Centisome position: 51.97

GC content: 60.27

Gene sequence:

>969_bases
TTGCGATATAGTCTTGATGTGACCCTCACAAGAAGATCCGTACTCACCGCCCTGTCCGCGGCCGCCGCCGCGCAAGCGCA
GCAGCGCCGTCCCCCGAACTGGAAACCGCGCCTGGGCGTGCTGGCCCAGTATTCGGACTCCAACCTGGAATTCATCAAGG
CCGAAGGCTTCACCAGCATGCAATTGCGGCTCGACCCGGCGAAACTGGACGACGCGGCGATCGCCGGTATTAAGGATAAG
ATCCAGCGGTCGGGAATCTACGTGTCGTCACTCGCGGTGGATGGCAACCACATCGATCCGGACCTGGCGGCGCGCGAGAA
GCAGAACAAGTACACGATCGCCTGCCTGGAGCTGTGCGGCAAGCTCGGCATCCCGAACATCGGAGGGCAGAGCGGCACCA
TCAAAGGACGTCCGCTGCAGGAACAGGTGGACGAGATCGTCAAGGTTTATACCGAGAAGTACTTTCCGGTATGCGAGAAG
AATAAGGTGCGCATCCTTTGGGAGCCTTATGCCGGCGGCCCCAACATCGGCACCGGTCCCGTGGGTTGGGAAGCGCTGTT
CAAGGGTTTCAAAGACAGTCCGCACGTGGGATTGCAGTTCGATCCGTCGCACCTGGTGTGGCAGTTCATGGATCCGGTGC
AGGCTGCGCGCGATTTCGCGGACAAGATCTACGACGTCCATCTGAAGGACTGCGAGATTCTCTGGCACCTGCTGCGGCGC
GGCGGGATCAATCCGGTGAACAATCAACGCTGGTGGCGGTTTCGGTTGCCTGGTAACGGCTCGGTGGACTGGAAGGGATT
CTTCGCGGTGCTCGCCGAGAACGGCTATACCGGCGCGATGAATATCGAGAACGAAGACGCGTTCTACTATCCGGCATACG
ACCAGGGCAACTTCACCGAGCAGTACAAGCGCGGTTTCCACCTGGCGCACGAGTTCCTGAAAACGCTGGTGCCGCCGGTG
AGCGTGTAG

Upstream 100 bases:

>100_bases
CAGCGCAGTTCCCGCGCCGCCTCCAACTGGCCCTCCGCCTGATGTTCTAGCGCTGATGCAAGGGGCTGGCATAGGAGCTC
CTTTGTGAGTACGGAAATGC

Downstream 100 bases:

>100_bases
AGGGCGCGTGGTTCGCGGAGTGCCGCGCACGGCGAAGAAGCCGCCTGAAAGGCGGCTGCAGGCCAAACGCCTGCCCCACA
AAGCCAAGCCTCCTGGAATC

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MRYSLDVTLTRRSVLTALSAAAAAQAQQRRPPNWKPRLGVLAQYSDSNLEFIKAEGFTSMQLRLDPAKLDDAAIAGIKDK
IQRSGIYVSSLAVDGNHIDPDLAAREKQNKYTIACLELCGKLGIPNIGGQSGTIKGRPLQEQVDEIVKVYTEKYFPVCEK
NKVRILWEPYAGGPNIGTGPVGWEALFKGFKDSPHVGLQFDPSHLVWQFMDPVQAARDFADKIYDVHLKDCEILWHLLRR
GGINPVNNQRWWRFRLPGNGSVDWKGFFAVLAENGYTGAMNIENEDAFYYPAYDQGNFTEQYKRGFHLAHEFLKTLVPPV
SV

Sequences:

>Translated_322_residues
MRYSLDVTLTRRSVLTALSAAAAAQAQQRRPPNWKPRLGVLAQYSDSNLEFIKAEGFTSMQLRLDPAKLDDAAIAGIKDK
IQRSGIYVSSLAVDGNHIDPDLAAREKQNKYTIACLELCGKLGIPNIGGQSGTIKGRPLQEQVDEIVKVYTEKYFPVCEK
NKVRILWEPYAGGPNIGTGPVGWEALFKGFKDSPHVGLQFDPSHLVWQFMDPVQAARDFADKIYDVHLKDCEILWHLLRR
GGINPVNNQRWWRFRLPGNGSVDWKGFFAVLAENGYTGAMNIENEDAFYYPAYDQGNFTEQYKRGFHLAHEFLKTLVPPV
SV
>Mature_322_residues
MRYSLDVTLTRRSVLTALSAAAAAQAQQRRPPNWKPRLGVLAQYSDSNLEFIKAEGFTSMQLRLDPAKLDDAAIAGIKDK
IQRSGIYVSSLAVDGNHIDPDLAAREKQNKYTIACLELCGKLGIPNIGGQSGTIKGRPLQEQVDEIVKVYTEKYFPVCEK
NKVRILWEPYAGGPNIGTGPVGWEALFKGFKDSPHVGLQFDPSHLVWQFMDPVQAARDFADKIYDVHLKDCEILWHLLRR
GGINPVNNQRWWRFRLPGNGSVDWKGFFAVLAENGYTGAMNIENEDAFYYPAYDQGNFTEQYKRGFHLAHEFLKTLVPPV
SV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011418
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2; PF07582 AP_endonuc_2_N [H]

EC number: NA

Molecular weight: Translated: 36233; Mature: 36233

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSLDVTLTRRSVLTALSAAAAAQAQQRRPPNWKPRLGVLAQYSDSNLEFIKAEGFTSM
CEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCEEE
QLRLDPAKLDDAAIAGIKDKIQRSGIYVSSLAVDGNHIDPDLAAREKQNKYTIACLELCG
EEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHCCCCEEEHHHHHHH
KLGIPNIGGQSGTIKGRPLQEQVDEIVKVYTEKYFPVCEKNKVRILWEPYAGGPNIGTGP
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCC
VGWEALFKGFKDSPHVGLQFDPSHLVWQFMDPVQAARDFADKIYDVHLKDCEILWHLLRR
CCHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GGINPVNNQRWWRFRLPGNGSVDWKGFFAVLAENGYTGAMNIENEDAFYYPAYDQGNFTE
CCCCCCCCCCEEEEECCCCCCCCHHEEEEEEECCCCEEEEECCCCCCEEECCCCCCCHHH
QYKRGFHLAHEFLKTLVPPVSV
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRYSLDVTLTRRSVLTALSAAAAAQAQQRRPPNWKPRLGVLAQYSDSNLEFIKAEGFTSM
CEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCEEE
QLRLDPAKLDDAAIAGIKDKIQRSGIYVSSLAVDGNHIDPDLAAREKQNKYTIACLELCG
EEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHCCCCEEEHHHHHHH
KLGIPNIGGQSGTIKGRPLQEQVDEIVKVYTEKYFPVCEKNKVRILWEPYAGGPNIGTGP
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCC
VGWEALFKGFKDSPHVGLQFDPSHLVWQFMDPVQAARDFADKIYDVHLKDCEILWHLLRR
CCHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GGINPVNNQRWWRFRLPGNGSVDWKGFFAVLAENGYTGAMNIENEDAFYYPAYDQGNFTE
CCCCCCCCCCEEEEECCCCCCCCHHEEEEEEECCCCEEEEECCCCCCEEECCCCCCCHHH
QYKRGFHLAHEFLKTLVPPVSV
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377; 8704981 [H]