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The map label for this gene is rbn [C]

Identifier: 116623093

GI number: 116623093

Start: 5066525

End: 5067664

Strand: Reverse

Name: rbn [C]

Synonym: Acid_3997

Alternate gene names: 116623093

Gene position: 5067664-5066525 (Counterclockwise)

Preceding gene: 116623099

Following gene: 116623089

Centisome position: 50.85

GC content: 57.46

Gene sequence:

>1140_bases
ATGGGCTTTGGCAAACGCATTCCCGCTAGACTGGCGACAGAGGTGGTGGTCTGTGGTCTCGCGTTTGCAAGAACCATTGC
CGCGGCTAGGCGATTGAATGCAACTGCGTCTGAATTGCATATGAAACGACACCTGGATCTTCTCAAGGAAACCTATCGAC
AGTGGAGCAGTCACGATGCACCGGCCATGGGAGCGGCGGTAGCCTTTTACAGCCTTGTGTCGCTTGCACCACTTGTGATT
TTGCTGGTGGGAATTTGCGCGTTGGTTTTTGGCGCAGCCGGCGCCCAAGCCCAGTTGCTCGAACAGTTCCGTGGTATGGT
CGGCGACGAAGGAGCGCGCGCTATCAGAACGGTGCTGACGAGCGCCCAGAAGCCGGCGACGGGCGTTTTGGCCAGCCTCT
TCGGGCTCATAACACTGCTTCTCGGTGCTTCCGGTGTTTTTATTGAGCTCCGCGCAGCCCTGAACAAACTGTGGGACGCA
GAGTCGGGAAGTATCGCAAGCGGCATTTGGTCCTTCATCAAGGACCGTTTTCTCTCAATCGGAATGGTGCTTGCCATTGG
CTTTTTGCTGCTCGTCTCCCTGGCGATCAGCGCAGGACTCGGAGCGCTTGGGAAGTTCTTTGGTAGCTTGGGTTTCCTTC
CGCCCGTCGTTTGGGAAGCGGTAAATTTCGTCGTCTCGTTGGGTGTCGTTGCGGGGCTCTTTGCGCTCATCCTTCGCTTC
GTGCCGAATATCCGCCTGCCATGGCACGACATCGGGCTGGGAGCTGTTTTGACAGCGGTCTTATTCACGATTGGGAAAAC
TGCCATCGGAATTTATTTGGGCAAGGCAGGCGTCGGGTCGGCATACGGCGCCGCTGGCTCGCTCGTCCTAATCATTGTAT
GGGTCTACTACTCGGCCCAAATCTTCTTCTTCGGAGCCATGTTCACCCGTGTTTATGCGCAGGCACACGGATGGCAGCCC
AAATCGGCGCCTCATTCGAAAGAAGAACACGCGCGTGCAACGCCAATCGGCGTTCGAAATGAGAGAGCGGCACGGGATGC
CGCCGCTGCAATCCCTTCGATCATCGCGAAGTTGGCTGCGGCCTGGATTGTGCTCGCGGCGGTCCTCAGAAGGGGCCTGT
CGTCGAGGCCAAACCGTTGA

Upstream 100 bases:

>100_bases
GCTTTGCCATATTGTTTCCTTTCGCAGCCTGTTGGCTTGGTCTCCTCGGAAAGCACGTCTTCCGCCAGACGCCCTAACTG
AGTGTACAGATCGGGAAGGC

Downstream 100 bases:

>100_bases
GTCCTCGGGCGCTCGCGCGAAATCGCCGGGCGACTACCCGGTATCATTCACGATCGGAACCGCGGCCGCGAACTCCGCGC
CGATTTCGGTCCGTTGATTT

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MGFGKRIPARLATEVVVCGLAFARTIAAARRLNATASELHMKRHLDLLKETYRQWSSHDAPAMGAAVAFYSLVSLAPLVI
LLVGICALVFGAAGAQAQLLEQFRGMVGDEGARAIRTVLTSAQKPATGVLASLFGLITLLLGASGVFIELRAALNKLWDA
ESGSIASGIWSFIKDRFLSIGMVLAIGFLLLVSLAISAGLGALGKFFGSLGFLPPVVWEAVNFVVSLGVVAGLFALILRF
VPNIRLPWHDIGLGAVLTAVLFTIGKTAIGIYLGKAGVGSAYGAAGSLVLIIVWVYYSAQIFFFGAMFTRVYAQAHGWQP
KSAPHSKEEHARATPIGVRNERAARDAAAAIPSIIAKLAAAWIVLAAVLRRGLSSRPNR

Sequences:

>Translated_379_residues
MGFGKRIPARLATEVVVCGLAFARTIAAARRLNATASELHMKRHLDLLKETYRQWSSHDAPAMGAAVAFYSLVSLAPLVI
LLVGICALVFGAAGAQAQLLEQFRGMVGDEGARAIRTVLTSAQKPATGVLASLFGLITLLLGASGVFIELRAALNKLWDA
ESGSIASGIWSFIKDRFLSIGMVLAIGFLLLVSLAISAGLGALGKFFGSLGFLPPVVWEAVNFVVSLGVVAGLFALILRF
VPNIRLPWHDIGLGAVLTAVLFTIGKTAIGIYLGKAGVGSAYGAAGSLVLIIVWVYYSAQIFFFGAMFTRVYAQAHGWQP
KSAPHSKEEHARATPIGVRNERAARDAAAAIPSIIAKLAAAWIVLAAVLRRGLSSRPNR
>Mature_378_residues
GFGKRIPARLATEVVVCGLAFARTIAAARRLNATASELHMKRHLDLLKETYRQWSSHDAPAMGAAVAFYSLVSLAPLVIL
LVGICALVFGAAGAQAQLLEQFRGMVGDEGARAIRTVLTSAQKPATGVLASLFGLITLLLGASGVFIELRAALNKLWDAE
SGSIASGIWSFIKDRFLSIGMVLAIGFLLLVSLAISAGLGALGKFFGSLGFLPPVVWEAVNFVVSLGVVAGLFALILRFV
PNIRLPWHDIGLGAVLTAVLFTIGKTAIGIYLGKAGVGSAYGAAGSLVLIIVWVYYSAQIFFFGAMFTRVYAQAHGWQPK
SAPHSKEEHARATPIGVRNERAARDAAAAIPSIIAKLAAAWIVLAAVLRRGLSSRPNR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 40046; Mature: 39915

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFGKRIPARLATEVVVCGLAFARTIAAARRLNATASELHMKRHLDLLKETYRQWSSHDA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PAMGAAVAFYSLVSLAPLVILLVGICALVFGAAGAQAQLLEQFRGMVGDEGARAIRTVLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
SAQKPATGVLASLFGLITLLLGASGVFIELRAALNKLWDAESGSIASGIWSFIKDRFLSI
HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GMVLAIGFLLLVSLAISAGLGALGKFFGSLGFLPPVVWEAVNFVVSLGVVAGLFALILRF
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPNIRLPWHDIGLGAVLTAVLFTIGKTAIGIYLGKAGVGSAYGAAGSLVLIIVWVYYSAQ
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
IFFFGAMFTRVYAQAHGWQPKSAPHSKEEHARATPIGVRNERAARDAAAAIPSIIAKLAA
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AWIVLAAVLRRGLSSRPNR
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GFGKRIPARLATEVVVCGLAFARTIAAARRLNATASELHMKRHLDLLKETYRQWSSHDA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PAMGAAVAFYSLVSLAPLVILLVGICALVFGAAGAQAQLLEQFRGMVGDEGARAIRTVLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
SAQKPATGVLASLFGLITLLLGASGVFIELRAALNKLWDAESGSIASGIWSFIKDRFLSI
HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GMVLAIGFLLLVSLAISAGLGALGKFFGSLGFLPPVVWEAVNFVVSLGVVAGLFALILRF
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPNIRLPWHDIGLGAVLTAVLFTIGKTAIGIYLGKAGVGSAYGAAGSLVLIIVWVYYSAQ
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
IFFFGAMFTRVYAQAHGWQPKSAPHSKEEHARATPIGVRNERAARDAAAAIPSIIAKLAA
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AWIVLAAVLRRGLSSRPNR
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA