Click here to switch to the map view.

The map label for this gene is asdII [H]

Identifier: 116622848

GI number: 116622848

Start: 4766268

End: 4767821

Strand: Reverse

Name: asdII [H]

Synonym: Acid_3748

Alternate gene names: 116622848

Gene position: 4767821-4766268 (Counterclockwise)

Preceding gene: 116622849

Following gene: 116622843

Centisome position: 47.84

GC content: 63.45

Gene sequence:

>1554_bases
ATGCTTCAACTTATGACCAGCAGACGCGGATTCTTACTTGGAACGGGCGCGGCCATCCTGACAGCGCGCCGGGGCATATC
ATCGGCATCCGCCGACCAGCGCGTGTCGATCGACCTCACGAAGGAGACCGGCACCATCCGTCCCGAGCTTCACGGCCATT
TCGCCGAGCATCTCGGAAGCTGCGTCTACGGCGGCCTGTGGGTCGGCAAGAACTCGAAAATCCCCAACATCAACGGCCTT
CGCAAGCAGGCGGTCGATTACCTTAAAGGTCTAGTCCCCGTGCTGCGCTGGCCCGGCGGCTGCTTCGCCGACGACTATCA
CTGGCGCGACGGCATCGGTCCCGCGGCCAGGCGTCCCAAGGGCGTCAACATCACCTGGGGCATGTACACCGAAGACAACA
GCTTCGGCACGCACGAGTTCATGGAACTCTGCCGCCTGATCGACGCGGCACCCTACCTCGCCGGCAACGTCGGCAGCGGC
ACCCCGGAAGAACTGCGCAACTGGATGGAATATTGCAACTATCCCAAGGGCAGTTCCCTCTCCGACGAGCGCGCCGCCAA
CGGTTCGCCCGAGCCCTTCAATGTGAAGTATTGGGGAGTGGGCAATGAGAACTGGGGCTGCGGCGGCAACATGAGCGGCG
ACGAGTACGCCACCCAGTACCGGCGCTTCGCCAACTACCTCCGCCCCTTCGGCTCCACGCCGCCCTTCCTGATCGCCTGC
GGTCCCAACGGCAACGACAAAACGTGGACCCAGAAGTTCTGGGGCAACATGCGCGGAGGCCGCCCCGCCGGCTTCGCCAT
GCATTTCTATTCCAACGGCCGCCGCAATGCCGCGACGCATTTCACCGTGGAGAACATGCGCGAGCAGCTCGCCACCTTCC
CCAATATCGAGGCCGCTATCATCGAACAGCGCGCGTTGATCGATACCCTCGCGCCGCCCAGCGCGCGCCAGGGTCCCGTC
GGCCTCCTCCTCGACGAATGGGGCGTGTGGGACCAGATGGACCCCGCCGAAGAGAAGAAGTACGGCCGCCTCTTCCAGCA
GATCACGATGCGCTCCGCCGTGGCCGCCGCCCTGGGACTCAACGTCATTCACCGCCAGGCCGGCAAACTCGTCATGACCA
ACATCGCGCAGATGGTGAACGTGCTCCACGCGCTCCTTCTGACCGAGGAAGACAAGTGCGTCCGCACCACCACCTACTAC
GTCTACGAGTTCACCAAGCCTCACCTCGGACAGACCAGCCTGCAGACCGAAACCGGCGAACCCGGCGCGATGGAGCTCTC
GATGTCCGCCTCGCGCAGGGAGAAGGACCTCACCATCACCCTGGTGAATCCCAAACCGGATACCACGATTAACGTCAACT
GTTCCCTCTCTGGCGCCACACCCGCCGGCGCCACCGGACGCGTCCTCCAGGACAACGACCTGAACGCCGCCAACACTTTC
ACAGACCCGAATCGCGTGGTCCCCAAGCCGTTAAAAGTCACCGCGCAAGGGGGCACGGTCACGGTGGAATTGCCCCCGCT
GTCGGTCGCGACGCTTTTGGTCAAGTTGAGTTAA

Upstream 100 bases:

>100_bases
GGGCAGACAATCCTGGCTTTGCTATATCCGAGCCGCGACCGTCAGGGAGCGTCCCCCAAACCTGCCCTGCTTGCATACCA
GGCCGGTGCGTTGTAACGTA

Downstream 100 bases:

>100_bases
GCCGTATCCGGGATGATATCGCCACCTGTAGTGCCGTCGGAAACCAGGCCCGGAATGGGTACGCCGCCGGCGTCGAGGAG
TTCGCACTTGTAGCCCGTGA

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase 2 [H]

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MLQLMTSRRGFLLGTGAAILTARRGISSASADQRVSIDLTKETGTIRPELHGHFAEHLGSCVYGGLWVGKNSKIPNINGL
RKQAVDYLKGLVPVLRWPGGCFADDYHWRDGIGPAARRPKGVNITWGMYTEDNSFGTHEFMELCRLIDAAPYLAGNVGSG
TPEELRNWMEYCNYPKGSSLSDERAANGSPEPFNVKYWGVGNENWGCGGNMSGDEYATQYRRFANYLRPFGSTPPFLIAC
GPNGNDKTWTQKFWGNMRGGRPAGFAMHFYSNGRRNAATHFTVENMREQLATFPNIEAAIIEQRALIDTLAPPSARQGPV
GLLLDEWGVWDQMDPAEEKKYGRLFQQITMRSAVAAALGLNVIHRQAGKLVMTNIAQMVNVLHALLLTEEDKCVRTTTYY
VYEFTKPHLGQTSLQTETGEPGAMELSMSASRREKDLTITLVNPKPDTTINVNCSLSGATPAGATGRVLQDNDLNAANTF
TDPNRVVPKPLKVTAQGGTVTVELPPLSVATLLVKLS

Sequences:

>Translated_517_residues
MLQLMTSRRGFLLGTGAAILTARRGISSASADQRVSIDLTKETGTIRPELHGHFAEHLGSCVYGGLWVGKNSKIPNINGL
RKQAVDYLKGLVPVLRWPGGCFADDYHWRDGIGPAARRPKGVNITWGMYTEDNSFGTHEFMELCRLIDAAPYLAGNVGSG
TPEELRNWMEYCNYPKGSSLSDERAANGSPEPFNVKYWGVGNENWGCGGNMSGDEYATQYRRFANYLRPFGSTPPFLIAC
GPNGNDKTWTQKFWGNMRGGRPAGFAMHFYSNGRRNAATHFTVENMREQLATFPNIEAAIIEQRALIDTLAPPSARQGPV
GLLLDEWGVWDQMDPAEEKKYGRLFQQITMRSAVAAALGLNVIHRQAGKLVMTNIAQMVNVLHALLLTEEDKCVRTTTYY
VYEFTKPHLGQTSLQTETGEPGAMELSMSASRREKDLTITLVNPKPDTTINVNCSLSGATPAGATGRVLQDNDLNAANTF
TDPNRVVPKPLKVTAQGGTVTVELPPLSVATLLVKLS
>Mature_517_residues
MLQLMTSRRGFLLGTGAAILTARRGISSASADQRVSIDLTKETGTIRPELHGHFAEHLGSCVYGGLWVGKNSKIPNINGL
RKQAVDYLKGLVPVLRWPGGCFADDYHWRDGIGPAARRPKGVNITWGMYTEDNSFGTHEFMELCRLIDAAPYLAGNVGSG
TPEELRNWMEYCNYPKGSSLSDERAANGSPEPFNVKYWGVGNENWGCGGNMSGDEYATQYRRFANYLRPFGSTPPFLIAC
GPNGNDKTWTQKFWGNMRGGRPAGFAMHFYSNGRRNAATHFTVENMREQLATFPNIEAAIIEQRALIDTLAPPSARQGPV
GLLLDEWGVWDQMDPAEEKKYGRLFQQITMRSAVAAALGLNVIHRQAGKLVMTNIAQMVNVLHALLLTEEDKCVRTTTYY
VYEFTKPHLGQTSLQTETGEPGAMELSMSASRREKDLTITLVNPKPDTTINVNCSLSGATPAGATGRVLQDNDLNAANTF
TDPNRVVPKPLKVTAQGGTVTVELPPLSVATLLVKLS

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR013780
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 56693; Mature: 56693

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLMTSRRGFLLGTGAAILTARRGISSASADQRVSIDLTKETGTIRPELHGHFAEHLGS
CCEEECCCCCEEEECCHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
CVYGGLWVGKNSKIPNINGLRKQAVDYLKGLVPVLRWPGGCFADDYHWRDGIGPAARRPK
HHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC
GVNITWGMYTEDNSFGTHEFMELCRLIDAAPYLAGNVGSGTPEELRNWMEYCNYPKGSSL
CCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
SDERAANGSPEPFNVKYWGVGNENWGCGGNMSGDEYATQYRRFANYLRPFGSTPPFLIAC
CCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
GPNGNDKTWTQKFWGNMRGGRPAGFAMHFYSNGRRNAATHFTVENMREQLATFPNIEAAI
CCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHCCCCHHHH
IEQRALIDTLAPPSARQGPVGLLLDEWGVWDQMDPAEEKKYGRLFQQITMRSAVAAALGL
HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NVIHRQAGKLVMTNIAQMVNVLHALLLTEEDKCVRTTTYYVYEFTKPHLGQTSLQTETGE
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC
PGAMELSMSASRREKDLTITLVNPKPDTTINVNCSLSGATPAGATGRVLQDNDLNAANTF
CCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCC
TDPNRVVPKPLKVTAQGGTVTVELPPLSVATLLVKLS
CCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MLQLMTSRRGFLLGTGAAILTARRGISSASADQRVSIDLTKETGTIRPELHGHFAEHLGS
CCEEECCCCCEEEECCHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
CVYGGLWVGKNSKIPNINGLRKQAVDYLKGLVPVLRWPGGCFADDYHWRDGIGPAARRPK
HHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC
GVNITWGMYTEDNSFGTHEFMELCRLIDAAPYLAGNVGSGTPEELRNWMEYCNYPKGSSL
CCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
SDERAANGSPEPFNVKYWGVGNENWGCGGNMSGDEYATQYRRFANYLRPFGSTPPFLIAC
CCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
GPNGNDKTWTQKFWGNMRGGRPAGFAMHFYSNGRRNAATHFTVENMREQLATFPNIEAAI
CCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHCCCCHHHH
IEQRALIDTLAPPSARQGPVGLLLDEWGVWDQMDPAEEKKYGRLFQQITMRSAVAAALGL
HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NVIHRQAGKLVMTNIAQMVNVLHALLLTEEDKCVRTTTYYVYEFTKPHLGQTSLQTETGE
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC
PGAMELSMSASRREKDLTITLVNPKPDTTINVNCSLSGATPAGATGRVLQDNDLNAANTF
CCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCC
TDPNRVVPKPLKVTAQGGTVTVELPPLSVATLLVKLS
CCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA