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The map label for this gene is 116622801

Identifier: 116622801

GI number: 116622801

Start: 4702146

End: 4703390

Strand: Reverse

Name: 116622801

Synonym: Acid_3701

Alternate gene names: NA

Gene position: 4703390-4702146 (Counterclockwise)

Preceding gene: 116622802

Following gene: 116622798

Centisome position: 47.2

GC content: 63.53

Gene sequence:

>1245_bases
ATGACGGATTACGGCTTCGAGCACCTGCTGCGAGAACTCGCGCCGCAGGTGCTCGGAGCGATTCTTCGCCGGTACCGGGA
TTTCCCGGCTGCCGAAGACGCACTTCAAGAGGCACTCGTCGCCGCTGCCACACAATGGCCGCTCGAAGGCGTGCCGGAGA
ACCCGCGTGCCTGGCTCACGCAGGTGGCATCCAGGCGAATGATCGACCAGATTCGCACCGATAGCGCTCGCCGGCAGCGT
GAGACCGCGGCGGCCATGGAGGCCGGCTACGCCATTCCGGCGCCGGACTCCGCTATCACGTCCAACGAAGATGACACGCT
CATTCTGATCTACATGTGTTGTCACCCGGCTCTGACCACATCATCGGCGATCGCCCTGACGCTGCGCGCCGTGGGCGGCT
TGACCACCGCGGAGATCGCGCACGCTTTCCTGGTGCCGGAGACAACCATGGCACAGCGCATCAGCCGCGCCAAACAAACC
ATTCGCGAGTCCGGCGTTCCATTTAAAATGCCCGTGCGCGAAGATCAGCATCAACGCCTTAGCGCCGTTCTGCACGTACT
CTATCTGATTTTCAACGAGGGCTATACGGCCAGCCAGGGAGAGCAGCTCCAGCGCGCGGACCTTGCCGCCGAGGCGATCC
GCCTGGCACGAGTGGTTTACACAAAACTGCCCGGGGACGCCGAAGTCGCAGGGCTTCTCGCCCTCATGCTGCTGACCGAT
GCGCGCCGCGCGGCGCGTTGTGGACCGCACAATGAAGTCATCCCTCTCGACAAACAGGACCGCACCCTGTGGGATCGAAC
TCAAATTGAGGAAGGCGCAAAACTGATCAGTGCTGCGCTCCCACGCGGAGCAGTGGGCCCGTATCAGCTGCAGGCCGCCA
TCGCCGCGGTCCATGACGAGTCCGCGACCGCAAACGATACGGACTGGCCGCAAATCCTCGCGCTTTACTCCGTGCTGAAG
AGAATGGTTGATAACCCGATGGTGACACTGAATCACGCCGTCGCAGCCGCGATGGTTCACGGCCCGGCGGAAGGACTGCG
GCTGATCGCGGAACTCGATGCCAGCGACCGGTTGCGCAATCACCACCGCTTGCACGCAGTCCGTGGGCACCTGTTGGAAA
TGGCGCAGGAGTTCACCGCCGCGATCGAAAACTACCAGGCGGCCGCGGCTCGCACAGCCAGCTTGCCGGAGAGGAACTAC
CTGCTTGCGCAGGCGGCCCGGCTCAGGGATCGTCAAGGGCCCTAG

Upstream 100 bases:

>100_bases
GTCGGCCGCCCCCGGGATGGGTGGGGCGCCGCTGAACATGCCCATCGAAGTCCGCCAGATCATGAGCGGTCCACCGGAAC
TGTAGGGAGCGGACCCGCGT

Downstream 100 bases:

>100_bases
CCGGAACCCACCTCCGGCGATGCTTCAACCGGCGCGGCGCTCCTGCCGAAATGTACCACCACGTGCCAGAGCTGCCTGAG
TAGGCGAAGGACGTCGTAAT

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTDYGFEHLLRELAPQVLGAILRRYRDFPAAEDALQEALVAAATQWPLEGVPENPRAWLTQVASRRMIDQIRTDSARRQR
ETAAAMEAGYAIPAPDSAITSNEDDTLILIYMCCHPALTTSSAIALTLRAVGGLTTAEIAHAFLVPETTMAQRISRAKQT
IRESGVPFKMPVREDQHQRLSAVLHVLYLIFNEGYTASQGEQLQRADLAAEAIRLARVVYTKLPGDAEVAGLLALMLLTD
ARRAARCGPHNEVIPLDKQDRTLWDRTQIEEGAKLISAALPRGAVGPYQLQAAIAAVHDESATANDTDWPQILALYSVLK
RMVDNPMVTLNHAVAAAMVHGPAEGLRLIAELDASDRLRNHHRLHAVRGHLLEMAQEFTAAIENYQAAAARTASLPERNY
LLAQAARLRDRQGP

Sequences:

>Translated_414_residues
MTDYGFEHLLRELAPQVLGAILRRYRDFPAAEDALQEALVAAATQWPLEGVPENPRAWLTQVASRRMIDQIRTDSARRQR
ETAAAMEAGYAIPAPDSAITSNEDDTLILIYMCCHPALTTSSAIALTLRAVGGLTTAEIAHAFLVPETTMAQRISRAKQT
IRESGVPFKMPVREDQHQRLSAVLHVLYLIFNEGYTASQGEQLQRADLAAEAIRLARVVYTKLPGDAEVAGLLALMLLTD
ARRAARCGPHNEVIPLDKQDRTLWDRTQIEEGAKLISAALPRGAVGPYQLQAAIAAVHDESATANDTDWPQILALYSVLK
RMVDNPMVTLNHAVAAAMVHGPAEGLRLIAELDASDRLRNHHRLHAVRGHLLEMAQEFTAAIENYQAAAARTASLPERNY
LLAQAARLRDRQGP
>Mature_413_residues
TDYGFEHLLRELAPQVLGAILRRYRDFPAAEDALQEALVAAATQWPLEGVPENPRAWLTQVASRRMIDQIRTDSARRQRE
TAAAMEAGYAIPAPDSAITSNEDDTLILIYMCCHPALTTSSAIALTLRAVGGLTTAEIAHAFLVPETTMAQRISRAKQTI
RESGVPFKMPVREDQHQRLSAVLHVLYLIFNEGYTASQGEQLQRADLAAEAIRLARVVYTKLPGDAEVAGLLALMLLTDA
RRAARCGPHNEVIPLDKQDRTLWDRTQIEEGAKLISAALPRGAVGPYQLQAAIAAVHDESATANDTDWPQILALYSVLKR
MVDNPMVTLNHAVAAAMVHGPAEGLRLIAELDASDRLRNHHRLHAVRGHLLEMAQEFTAAIENYQAAAARTASLPERNYL
LAQAARLRDRQGP

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45496; Mature: 45364

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYGFEHLLRELAPQVLGAILRRYRDFPAAEDALQEALVAAATQWPLEGVPENPRAWLT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
QVASRRMIDQIRTDSARRQRETAAAMEAGYAIPAPDSAITSNEDDTLILIYMCCHPALTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCC
SSAIALTLRAVGGLTTAEIAHAFLVPETTMAQRISRAKQTIRESGVPFKMPVREDQHQRL
CHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHH
SAVLHVLYLIFNEGYTASQGEQLQRADLAAEAIRLARVVYTKLPGDAEVAGLLALMLLTD
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ARRAARCGPHNEVIPLDKQDRTLWDRTQIEEGAKLISAALPRGAVGPYQLQAAIAAVHDE
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
SATANDTDWPQILALYSVLKRMVDNPMVTLNHAVAAAMVHGPAEGLRLIAELDASDRLRN
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
HHRLHAVRGHLLEMAQEFTAAIENYQAAAARTASLPERNYLLAQAARLRDRQGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDYGFEHLLRELAPQVLGAILRRYRDFPAAEDALQEALVAAATQWPLEGVPENPRAWLT
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
QVASRRMIDQIRTDSARRQRETAAAMEAGYAIPAPDSAITSNEDDTLILIYMCCHPALTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCC
SSAIALTLRAVGGLTTAEIAHAFLVPETTMAQRISRAKQTIRESGVPFKMPVREDQHQRL
CHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHH
SAVLHVLYLIFNEGYTASQGEQLQRADLAAEAIRLARVVYTKLPGDAEVAGLLALMLLTD
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ARRAARCGPHNEVIPLDKQDRTLWDRTQIEEGAKLISAALPRGAVGPYQLQAAIAAVHDE
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
SATANDTDWPQILALYSVLKRMVDNPMVTLNHAVAAAMVHGPAEGLRLIAELDASDRLRN
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
HHRLHAVRGHLLEMAQEFTAAIENYQAAAARTASLPERNYLLAQAARLRDRQGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]