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The map label for this gene is xynB [H]

Identifier: 116622747

GI number: 116622747

Start: 4622880

End: 4624541

Strand: Direct

Name: xynB [H]

Synonym: Acid_3646

Alternate gene names: 116622747

Gene position: 4622880-4624541 (Clockwise)

Preceding gene: 116622744

Following gene: 116622748

Centisome position: 46.39

GC content: 63.0

Gene sequence:

>1662_bases
ATGCGCAATTTCGGATTTTGCATGCTGGCGCTAGCCGCCACCGCGGGCGCGCAAACGCCCGTAACCATCCGCGTGGATGT
CGCGGCAAGTGTGGGCGCCTATCGCCCGATGTACGCCTACTTCGGCTACGACGAGCCCAACTACACCTACATGCCGAACG
GCAAGAAGCTGATCGGCGAACTGGCGGCCCTCAGTCCCGAGACTGTACAGGTGCGCGTTCACCATCTGCTGGTGACGGGC
GATGGAACACCGGCCCTGAAGTGGGGCTCGACCAATGCCTACACCGAAGACGCCGCCGGCAAGCCGGTGTACGACTGGAA
AATCGTGGACCGTATCTTCGATACCTTGATCGAGGCACACGCCCGGCCTTTCGTGGAGATCGGGTTCATGCCCGAGGCGC
TCTCCACGAACCCGCAGCCTTACGTGGTGAACTGGCCGGCCCGCGATGGCGGCAAGGGCTGGAGCTATCCGCCGAAGGAC
TACGCAAAGTGGGCGGAGCTGGTGCGCCAGTGGGTGCTGCATTCGGTAGCTCGATACGGCAGGGCCGAAGTGGAGCAGTG
GAGTTGGGAGTTGTGGAACGAACCGGATATCTCCTATTGGCGCGGCACGCCGGAGGAGTACAACAAGCTCTACGACTACA
CGTCGGACGCGGTGAAACGAGCGCTCCCAACCGCGCGCATCGGCGGCCCTGGAACCACGGGTGCCGGAGCGCCCAAGGCG
GCGGCCTTCCTCAAGCAGTTTCTTGAGCACTGCGCGCGTGGCGCGAACGCCGCGACCGGAAAGACGGGCGCGCCGCTGGA
TTTCATCACCTATCACGCCAAGGGTCAGCCGAAAGTGGTCAGCGGCCACGTGCAGATGGGACTCTCCAAAGAGATGGTGG
ACGTGCAGCGCGGTATCGAAGTGATCAACGAATTCCCCCAGTATCGCGCGCTCCCGATCGTGCTCAGCGAGGCCGATCCC
GAAGGCTGCGCGGCCTGCTCCGCGCGCACTAATCCGCAGAATCTGTATCGTAACGGCCTGATGTACCCCAGTTATACGGC
TGCCGCGTACAGCAACATCTTCAAACTCGCCGATCGCTACAAGTCGAACATGGCGGGGATGCTGACCTGGGCCTTCGAGT
TCGAAGGGCAGCCGTACTTCGACGGCTTTCGCACGCTCGCCACCAATGGAATCGATAAGCCGGTGCTGAATTTCTTCCGC
ATGGCGGCAATGATGAAGGGCGACCGCGTGAAGGTGGAGAGCAGCGGCGGCTTGGGTCTCGATAAGCTGCTGAGCACGGG
CGTGCGCGATGCGGCCGATGTGGACGCGATGGCCACGCGCGCCGACCGGGAACTCGCGGTGCTCGTGTGGAACTACCACG
ACGACGAAACCGCCGCCACTTCCGCGAAGGTGCAGGTGGATGTGGGCGGGATCGCGAAGAACGTAGGCGCCGTCCTCGTG
CAGCACTATCGCATCGACGACGATCACAGCAACGCATACACGTTGTGGAAACAGATGGGGTCGCCGCAACAGCCCACGGA
GGAGCAGTACGCGAAGCTCGAGGCGTCCGGCCAGTTGCAGCTGCTCACTTCGCCCGAGTGGCGCCACCCCAAAGAAGGCA
AACTCACGCTAGGCTTCACCCTCCCGCACCATGCCGTGTCGCTCGTTCGCGTAACTTGGTAG

Upstream 100 bases:

>100_bases
CGGAATATACGCCTTCCAGCTTCAAAACTCTTCCTCCAGGGATAATTTGCGATTACTCTGATACTGTAGCGTGTAAGCGA
TTCCATCTCAAGGAAACCCG

Downstream 100 bases:

>100_bases
GCTCGGACCGTATGCTTCCAAACGCGTTCATCGGGCGGACCAAGGCGCCAACCGATGAGGAACTTTCCATGGAGCTCGGC
GATGCCCGGGCCTTGTGGGA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MRNFGFCMLALAATAGAQTPVTIRVDVAASVGAYRPMYAYFGYDEPNYTYMPNGKKLIGELAALSPETVQVRVHHLLVTG
DGTPALKWGSTNAYTEDAAGKPVYDWKIVDRIFDTLIEAHARPFVEIGFMPEALSTNPQPYVVNWPARDGGKGWSYPPKD
YAKWAELVRQWVLHSVARYGRAEVEQWSWELWNEPDISYWRGTPEEYNKLYDYTSDAVKRALPTARIGGPGTTGAGAPKA
AAFLKQFLEHCARGANAATGKTGAPLDFITYHAKGQPKVVSGHVQMGLSKEMVDVQRGIEVINEFPQYRALPIVLSEADP
EGCAACSARTNPQNLYRNGLMYPSYTAAAYSNIFKLADRYKSNMAGMLTWAFEFEGQPYFDGFRTLATNGIDKPVLNFFR
MAAMMKGDRVKVESSGGLGLDKLLSTGVRDAADVDAMATRADRELAVLVWNYHDDETAATSAKVQVDVGGIAKNVGAVLV
QHYRIDDDHSNAYTLWKQMGSPQQPTEEQYAKLEASGQLQLLTSPEWRHPKEGKLTLGFTLPHHAVSLVRVTW

Sequences:

>Translated_553_residues
MRNFGFCMLALAATAGAQTPVTIRVDVAASVGAYRPMYAYFGYDEPNYTYMPNGKKLIGELAALSPETVQVRVHHLLVTG
DGTPALKWGSTNAYTEDAAGKPVYDWKIVDRIFDTLIEAHARPFVEIGFMPEALSTNPQPYVVNWPARDGGKGWSYPPKD
YAKWAELVRQWVLHSVARYGRAEVEQWSWELWNEPDISYWRGTPEEYNKLYDYTSDAVKRALPTARIGGPGTTGAGAPKA
AAFLKQFLEHCARGANAATGKTGAPLDFITYHAKGQPKVVSGHVQMGLSKEMVDVQRGIEVINEFPQYRALPIVLSEADP
EGCAACSARTNPQNLYRNGLMYPSYTAAAYSNIFKLADRYKSNMAGMLTWAFEFEGQPYFDGFRTLATNGIDKPVLNFFR
MAAMMKGDRVKVESSGGLGLDKLLSTGVRDAADVDAMATRADRELAVLVWNYHDDETAATSAKVQVDVGGIAKNVGAVLV
QHYRIDDDHSNAYTLWKQMGSPQQPTEEQYAKLEASGQLQLLTSPEWRHPKEGKLTLGFTLPHHAVSLVRVTW
>Mature_553_residues
MRNFGFCMLALAATAGAQTPVTIRVDVAASVGAYRPMYAYFGYDEPNYTYMPNGKKLIGELAALSPETVQVRVHHLLVTG
DGTPALKWGSTNAYTEDAAGKPVYDWKIVDRIFDTLIEAHARPFVEIGFMPEALSTNPQPYVVNWPARDGGKGWSYPPKD
YAKWAELVRQWVLHSVARYGRAEVEQWSWELWNEPDISYWRGTPEEYNKLYDYTSDAVKRALPTARIGGPGTTGAGAPKA
AAFLKQFLEHCARGANAATGKTGAPLDFITYHAKGQPKVVSGHVQMGLSKEMVDVQRGIEVINEFPQYRALPIVLSEADP
EGCAACSARTNPQNLYRNGLMYPSYTAAAYSNIFKLADRYKSNMAGMLTWAFEFEGQPYFDGFRTLATNGIDKPVLNFFR
MAAMMKGDRVKVESSGGLGLDKLLSTGVRDAADVDAMATRADRELAVLVWNYHDDETAATSAKVQVDVGGIAKNVGAVLV
QHYRIDDDHSNAYTLWKQMGSPQQPTEEQYAKLEASGQLQLLTSPEWRHPKEGKLTLGFTLPHHAVSLVRVTW

Specific function: Has hydrolytic activity towards xylopentaose, xylotriose, xylobiose and P-nitrophenyl-beta-D-xylopyranoside, but has no activity toward xylan [H]

COG id: COG3664

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 39 family [H]

Homologues:

Organism=Homo sapiens, GI110611239, Length=413, Percent_Identity=28.0871670702179, Blast_Score=103, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24583638, Length=240, Percent_Identity=25, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000514
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF01229 Glyco_hydro_39 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 61202; Mature: 61202

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNFGFCMLALAATAGAQTPVTIRVDVAASVGAYRPMYAYFGYDEPNYTYMPNGKKLIGE
CCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCHHHHHH
LAALSPETVQVRVHHLLVTGDGTPALKWGSTNAYTEDAAGKPVYDWKIVDRIFDTLIEAH
HHHCCCCEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ARPFVEIGFMPEALSTNPQPYVVNWPARDGGKGWSYPPKDYAKWAELVRQWVLHSVARYG
CCCEEEECCCCHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
RAEVEQWSWELWNEPDISYWRGTPEEYNKLYDYTSDAVKRALPTARIGGPGTTGAGAPKA
HHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
AAFLKQFLEHCARGANAATGKTGAPLDFITYHAKGQPKVVSGHVQMGLSKEMVDVQRGIE
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEECHHHCCCCHHHHHHHHHHH
VINEFPQYRALPIVLSEADPEGCAACSARTNPQNLYRNGLMYPSYTAAAYSNIFKLADRY
HHHHCCCCCEEEEEEECCCCCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KSNMAGMLTWAFEFEGQPYFDGFRTLATNGIDKPVLNFFRMAAMMKGDRVKVESSGGLGL
HCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCH
DKLLSTGVRDAADVDAMATRADRELAVLVWNYHDDETAATSAKVQVDVGGIAKNVGAVLV
HHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCHHCCCEEEEEECCHHHHHHHHHHH
QHYRIDDDHSNAYTLWKQMGSPQQPTEEQYAKLEASGQLQLLTSPEWRHPKEGKLTLGFT
HHEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEE
LPHHAVSLVRVTW
CCHHHEEEEEEEC
>Mature Secondary Structure
MRNFGFCMLALAATAGAQTPVTIRVDVAASVGAYRPMYAYFGYDEPNYTYMPNGKKLIGE
CCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEECCCCHHHHHH
LAALSPETVQVRVHHLLVTGDGTPALKWGSTNAYTEDAAGKPVYDWKIVDRIFDTLIEAH
HHHCCCCEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ARPFVEIGFMPEALSTNPQPYVVNWPARDGGKGWSYPPKDYAKWAELVRQWVLHSVARYG
CCCEEEECCCCHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
RAEVEQWSWELWNEPDISYWRGTPEEYNKLYDYTSDAVKRALPTARIGGPGTTGAGAPKA
HHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
AAFLKQFLEHCARGANAATGKTGAPLDFITYHAKGQPKVVSGHVQMGLSKEMVDVQRGIE
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEECHHHCCCCHHHHHHHHHHH
VINEFPQYRALPIVLSEADPEGCAACSARTNPQNLYRNGLMYPSYTAAAYSNIFKLADRY
HHHHCCCCCEEEEEEECCCCCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
KSNMAGMLTWAFEFEGQPYFDGFRTLATNGIDKPVLNFFRMAAMMKGDRVKVESSGGLGL
HCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCH
DKLLSTGVRDAADVDAMATRADRELAVLVWNYHDDETAATSAKVQVDVGGIAKNVGAVLV
HHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCHHCCCEEEEEECCHHHHHHHHHHH
QHYRIDDDHSNAYTLWKQMGSPQQPTEEQYAKLEASGQLQLLTSPEWRHPKEGKLTLGFT
HHEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEE
LPHHAVSLVRVTW
CCHHHEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8360617; 8612648; 9761746 [H]