Click here to switch to the map view.

The map label for this gene is petB [H]

Identifier: 116622607

GI number: 116622607

Start: 4435865

End: 4437181

Strand: Direct

Name: petB [H]

Synonym: Acid_3505

Alternate gene names: 116622607

Gene position: 4435865-4437181 (Clockwise)

Preceding gene: 116622606

Following gene: 116622608

Centisome position: 44.51

GC content: 62.64

Gene sequence:

>1317_bases
ATGAGCCAGGCCACAAAAACTCCATCGACGGGCTCCACATCCACGTGGACCAACCTACGCGAGTTGCCGGCCAACGTCTG
GAACTCGCTCTTCCGCAATCCGCTCCCCGGCAATGACCTGGAACGCGCCTCCACCAGCTTCACCAACTTCTTCCTCCACA
TTCACCCCGTCAAGGTCAACAAGAACACCCTCCGCCCGCTCTACACCCTGGGCCTCGGCCTGATGTCGTTCTTCCTCTTC
GTCATCCTGGTGGCCACCGGCATCCTGCTGATGTTCTACTACGTGCCCTCCACCACCCAGGCCTACGACCGGATGCTCGA
TCTCCGCGGCACCGTCGCCTTCGGCACCTTCCTGCGCAACATGCACCGCTGGTCGGCCCACGGCATGGTCGCCATCGTCT
TCCTCCACATGTGCCGCGTCTTCTTCACCGGCTCTTACAAAAAGCCGCGCGAATTCAACTGGGTTCTCGGCGTCGTGCTC
TTCCTGCTGACGCTCTTCCTGAGCTTCACCGGCTATCTCCTCCCCTGGGACCAGCTCGCATTCTGGGCGATCACCGTCGG
CACCTCGATCGCGGGCTACGCTCCCGTGGTCGGCCAGGATATCAAGTTCCTCCTCCTCGGCGACGCCACCGTCGGTCAGG
AAGCCCTGCTGCGCTTCTACGTCCTGCACGTGGCCGTACTGCCCGCCGTCCTCACCCTCCTGATCGCGATTCACTTCTGG
CGCATCCGCAAGGATGGCGGCCTCTCCCGTCCCCCGGAGGCCGATGACCCGTCGCCCGAAATCGTCAGCGCCCCGCCTTC
CATCGCCATTACCGTCAAGGCCAAGGAGATCACGAAGAACAAGCTCTACGGCCTGCAAGGCTTCGTCCGCGGACCCTTCA
CCAAAGTCGGCAACGTACCCGACCGCAGCGTCTTCTCCTGGCCCAACCTGGTGATCGCCGAGCTCTTCGTCTTCGTGCTC
ACGCTTGCCGTCATCCTCTGCGTCGCGCTGATCTTCAACGCGCCGCTCGAGCAGCCGGTCAACGTCATGCACCCGCCGAA
TCCGGCGAAAGCGCCCTGGTACTTCCTCGGCCTACAGGAGATGGTGAGCTACTCCGCCTTCTGGGGCGGCGTCGGAATTC
CTACCGTCTTCGTGATCCTCTTATTGCTGGTGCCGTACCTCGATCGCGGCGCCGGCGGGGTAGGGAAGTGGTTCGCCCGC
GAGCGCCTGCTCTCCAACACGCTCTACCTCACCACCGTGATCATCAACCTCATCCTGATCGTCATCGGGACCTTCTTCCG
TGGCCCCAATTGGGAGTTCATCTCCCCGTGGAAATGA

Upstream 100 bases:

>100_bases
CCCCCAAGCCGCTGCCCTGGTTCAAGATCACCCGCGCCCCCAATGGCGAACTCGAGATCGATAAGGACTCGCAGATCGAG
CCCGGGAGCTATTTCAACGT

Downstream 100 bases:

>100_bases
CCATGCGACTGCCACTTGCGATAGCGAGTTTCATCATCCTCATTGTTCACGGCCTGGTCTTCTATGATCAGTTCTTCCAC
AAGTGGGAGAACTACCAGAC

Product: cytochrome b/b6 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MSQATKTPSTGSTSTWTNLRELPANVWNSLFRNPLPGNDLERASTSFTNFFLHIHPVKVNKNTLRPLYTLGLGLMSFFLF
VILVATGILLMFYYVPSTTQAYDRMLDLRGTVAFGTFLRNMHRWSAHGMVAIVFLHMCRVFFTGSYKKPREFNWVLGVVL
FLLTLFLSFTGYLLPWDQLAFWAITVGTSIAGYAPVVGQDIKFLLLGDATVGQEALLRFYVLHVAVLPAVLTLLIAIHFW
RIRKDGGLSRPPEADDPSPEIVSAPPSIAITVKAKEITKNKLYGLQGFVRGPFTKVGNVPDRSVFSWPNLVIAELFVFVL
TLAVILCVALIFNAPLEQPVNVMHPPNPAKAPWYFLGLQEMVSYSAFWGGVGIPTVFVILLLLVPYLDRGAGGVGKWFAR
ERLLSNTLYLTTVIINLILIVIGTFFRGPNWEFISPWK

Sequences:

>Translated_438_residues
MSQATKTPSTGSTSTWTNLRELPANVWNSLFRNPLPGNDLERASTSFTNFFLHIHPVKVNKNTLRPLYTLGLGLMSFFLF
VILVATGILLMFYYVPSTTQAYDRMLDLRGTVAFGTFLRNMHRWSAHGMVAIVFLHMCRVFFTGSYKKPREFNWVLGVVL
FLLTLFLSFTGYLLPWDQLAFWAITVGTSIAGYAPVVGQDIKFLLLGDATVGQEALLRFYVLHVAVLPAVLTLLIAIHFW
RIRKDGGLSRPPEADDPSPEIVSAPPSIAITVKAKEITKNKLYGLQGFVRGPFTKVGNVPDRSVFSWPNLVIAELFVFVL
TLAVILCVALIFNAPLEQPVNVMHPPNPAKAPWYFLGLQEMVSYSAFWGGVGIPTVFVILLLLVPYLDRGAGGVGKWFAR
ERLLSNTLYLTTVIINLILIVIGTFFRGPNWEFISPWK
>Mature_437_residues
SQATKTPSTGSTSTWTNLRELPANVWNSLFRNPLPGNDLERASTSFTNFFLHIHPVKVNKNTLRPLYTLGLGLMSFFLFV
ILVATGILLMFYYVPSTTQAYDRMLDLRGTVAFGTFLRNMHRWSAHGMVAIVFLHMCRVFFTGSYKKPREFNWVLGVVLF
LLTLFLSFTGYLLPWDQLAFWAITVGTSIAGYAPVVGQDIKFLLLGDATVGQEALLRFYVLHVAVLPAVLTLLIAIHFWR
IRKDGGLSRPPEADDPSPEIVSAPPSIAITVKAKEITKNKLYGLQGFVRGPFTKVGNVPDRSVFSWPNLVIAELFVFVLT
LAVILCVALIFNAPLEQPVNVMHPPNPAKAPWYFLGLQEMVSYSAFWGGVGIPTVFVILLLLVPYLDRGAGGVGKWFARE
RLLSNTLYLTTVIINLILIVIGTFFRGPNWEFISPWK

Specific function: Component of the cytochrome bc complex which donates electrons to the photosynthetic reaction center [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=167, Percent_Identity=28.7425149700599, Blast_Score=90, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6226529, Length=319, Percent_Identity=26.6457680250784, Blast_Score=83, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6226532, Length=168, Percent_Identity=30.3571428571429, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6226531, Length=131, Percent_Identity=31.2977099236641, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 49007; Mature: 48876

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQATKTPSTGSTSTWTNLRELPANVWNSLFRNPLPGNDLERASTSFTNFFLHIHPVKVN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEEEEEEEC
KNTLRPLYTLGLGLMSFFLFVILVATGILLMFYYVPSTTQAYDRMLDLRGTVAFGTFLRN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHH
MHRWSAHGMVAIVFLHMCRVFFTGSYKKPREFNWVLGVVLFLLTLFLSFTGYLLPWDQLA
HHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
FWAITVGTSIAGYAPVVGQDIKFLLLGDATVGQEALLRFYVLHVAVLPAVLTLLIAIHFW
HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRKDGGLSRPPEADDPSPEIVSAPPSIAITVKAKEITKNKLYGLQGFVRGPFTKVGNVP
HHCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHCCCCC
DRSVFSWPNLVIAELFVFVLTLAVILCVALIFNAPLEQPVNVMHPPNPAKAPWYFLGLQE
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
MVSYSAFWGGVGIPTVFVILLLLVPYLDRGAGGVGKWFARERLLSNTLYLTTVIINLILI
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGTFFRGPNWEFISPWK
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SQATKTPSTGSTSTWTNLRELPANVWNSLFRNPLPGNDLERASTSFTNFFLHIHPVKVN
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEEEEEEEC
KNTLRPLYTLGLGLMSFFLFVILVATGILLMFYYVPSTTQAYDRMLDLRGTVAFGTFLRN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHH
MHRWSAHGMVAIVFLHMCRVFFTGSYKKPREFNWVLGVVLFLLTLFLSFTGYLLPWDQLA
HHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
FWAITVGTSIAGYAPVVGQDIKFLLLGDATVGQEALLRFYVLHVAVLPAVLTLLIAIHFW
HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRKDGGLSRPPEADDPSPEIVSAPPSIAITVKAKEITKNKLYGLQGFVRGPFTKVGNVP
HHCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHCCCCC
DRSVFSWPNLVIAELFVFVLTLAVILCVALIFNAPLEQPVNVMHPPNPAKAPWYFLGLQE
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
MVSYSAFWGGVGIPTVFVILLLLVPYLDRGAGGVGKWFARERLLSNTLYLTTVIINLILI
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGTFFRGPNWEFISPWK
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA