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The map label for this gene is ybbK [C]

Identifier: 116622550

GI number: 116622550

Start: 4361008

End: 4362099

Strand: Direct

Name: ybbK [C]

Synonym: Acid_3448

Alternate gene names: 116622550

Gene position: 4361008-4362099 (Clockwise)

Preceding gene: 116622548

Following gene: 116622553

Centisome position: 43.76

GC content: 64.01

Gene sequence:

>1092_bases
ATGTTTCGTCGCATTCTTGTTGGCGATAACGAGCGCGTGCTTGTTATCCGTAAGCGCCGCTTCTCGACGATTCTCGCCCC
CGGCGAGTACCGGATCTTTACGCTCGGCCGCGGCCTCGAGTTCGAGCGCCACAACACGAAGCAGTTGATCCTCTGCAGCG
ACTACGCCGACACGATCGCGCGGCAGTTCCCCGCACTGGCCGCGCTGCACTTCACCGTGATCGAAACCGGCGAGTCGCAG
GTCGCCATTGTGTACCTGGATGGCCGCCTCTCGCGCGTAATTCCGCCCGCCAGCCGCGTCCTCTATTTCAAGGGCGCGGT
CGAAGTCGCGTTCAGGCTGATCGATATCCGCGCCGAACCCGAGGTGCCCGCGCGCCTGGTCTCCGCGCTCGTCCGCCTTG
GCGAGACTCGCGCCGCCTTCGCCGTGATCGAGCAAGGCAGGCGCGGACTCCTGTACCTCGATGGCCGCCTCATCCGCGAG
TTGCAGCCCGGAGCCTACGCGTTCTGGAACTCCGTGATGACGCCCCGCGTGGACGTGCTGGAGATGCGCCGCCAGACCGT
AGAGGTGCCCGGCCAGGAGATCCTGACCCGGGACAAGGTAACGCTCCGCGTCAACGTCTCCGCGGTCTATGAGATCGTAG
ACGCCGTCAGGGCCCGTTCCGGCGTGAAGGACGTGGATGCTCACCTCTACCGCACGCTGCAGATCGCTGTCCGCCAGACG
CTGGGCAAGCGCACGCTCGACGAAGTGCTGGCGGAGAAGGTCGATCTCGATGAGACCGTGTCCGCCCAGGTGCGCCGGGA
AATGGAGCAGTACGGTATTCGTGTGAGCGCGATCGCGCTCAAGGACATCATCCTGCCCGGCGACATCCGCGAGATCCTCA
ACCAGGTGGTGACCGCCGAGAAGCAGGCGCAGGCCAACCTGATCCGCCGGCGTGAAGAGACTGCTGCCACGCGCAGCCTG
CTCAACACCGCCAAACTGATGGAGGACAACCCTCTGTTGGTCCGCATGAAGGAGCTCGAGACGCTAGAGAAGATCGCCGA
GAAGGTGGAAAAGATCCACGTGTTCGGTGGACTGAAGGGCTTACTCGAGTGA

Upstream 100 bases:

>100_bases
GCGGTTCGCTCTGGCGGCGGTCCGCCGCGGATGCCGTGGAGTGGGGCCTGGGCCGCTCTGCAATCCAACTACTCAAGCCA
ATCACCCCAGGAGGTGAGCC

Downstream 100 bases:

>100_bases
TTCCCTGTTTCAGAAGTTCGATCACGTATTGCGCGATCGCTTGCTGACGCGCGCGGCTCCGATCAGAGCCGCGACCGTTA
GGGAGCGATCGCCAGGAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MFRRILVGDNERVLVIRKRRFSTILAPGEYRIFTLGRGLEFERHNTKQLILCSDYADTIARQFPALAALHFTVIETGESQ
VAIVYLDGRLSRVIPPASRVLYFKGAVEVAFRLIDIRAEPEVPARLVSALVRLGETRAAFAVIEQGRRGLLYLDGRLIRE
LQPGAYAFWNSVMTPRVDVLEMRRQTVEVPGQEILTRDKVTLRVNVSAVYEIVDAVRARSGVKDVDAHLYRTLQIAVRQT
LGKRTLDEVLAEKVDLDETVSAQVRREMEQYGIRVSAIALKDIILPGDIREILNQVVTAEKQAQANLIRRREETAATRSL
LNTAKLMEDNPLLVRMKELETLEKIAEKVEKIHVFGGLKGLLE

Sequences:

>Translated_363_residues
MFRRILVGDNERVLVIRKRRFSTILAPGEYRIFTLGRGLEFERHNTKQLILCSDYADTIARQFPALAALHFTVIETGESQ
VAIVYLDGRLSRVIPPASRVLYFKGAVEVAFRLIDIRAEPEVPARLVSALVRLGETRAAFAVIEQGRRGLLYLDGRLIRE
LQPGAYAFWNSVMTPRVDVLEMRRQTVEVPGQEILTRDKVTLRVNVSAVYEIVDAVRARSGVKDVDAHLYRTLQIAVRQT
LGKRTLDEVLAEKVDLDETVSAQVRREMEQYGIRVSAIALKDIILPGDIREILNQVVTAEKQAQANLIRRREETAATRSL
LNTAKLMEDNPLLVRMKELETLEKIAEKVEKIHVFGGLKGLLE
>Mature_363_residues
MFRRILVGDNERVLVIRKRRFSTILAPGEYRIFTLGRGLEFERHNTKQLILCSDYADTIARQFPALAALHFTVIETGESQ
VAIVYLDGRLSRVIPPASRVLYFKGAVEVAFRLIDIRAEPEVPARLVSALVRLGETRAAFAVIEQGRRGLLYLDGRLIRE
LQPGAYAFWNSVMTPRVDVLEMRRQTVEVPGQEILTRDKVTLRVNVSAVYEIVDAVRARSGVKDVDAHLYRTLQIAVRQT
LGKRTLDEVLAEKVDLDETVSAQVRREMEQYGIRVSAIALKDIILPGDIREILNQVVTAEKQAQANLIRRREETAATRSL
LNTAKLMEDNPLLVRMKELETLEKIAEKVEKIHVFGGLKGLLE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=192, Percent_Identity=29.1666666666667, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI21686995, Length=192, Percent_Identity=29.1666666666667, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI38016911, Length=214, Percent_Identity=24.2990654205607, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI7305503, Length=208, Percent_Identity=28.3653846153846, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7657615, Length=207, Percent_Identity=25.6038647342995, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1786697, Length=191, Percent_Identity=24.0837696335079, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI32566490, Length=206, Percent_Identity=28.1553398058252, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71987621, Length=217, Percent_Identity=25.3456221198157, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71989948, Length=206, Percent_Identity=28.1553398058252, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17570161, Length=223, Percent_Identity=26.9058295964126, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71987612, Length=217, Percent_Identity=25.3456221198157, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI25153583, Length=217, Percent_Identity=25.3456221198157, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193210507, Length=223, Percent_Identity=26.9058295964126, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17569499, Length=214, Percent_Identity=24.7663551401869, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17569493, Length=229, Percent_Identity=24.4541484716157, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193209764, Length=229, Percent_Identity=24.4541484716157, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569497, Length=179, Percent_Identity=25.6983240223464, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71989955, Length=146, Percent_Identity=29.4520547945205, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17570459, Length=180, Percent_Identity=25, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI62484448, Length=221, Percent_Identity=28.0542986425339, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI281365664, Length=221, Percent_Identity=28.0542986425339, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24657857, Length=221, Percent_Identity=28.0542986425339, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI62484274, Length=221, Percent_Identity=28.0542986425339, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21356845, Length=214, Percent_Identity=25.7009345794392, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI45556022, Length=220, Percent_Identity=24.5454545454545, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28573263, Length=186, Percent_Identity=26.8817204301075, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI18860517, Length=221, Percent_Identity=25.3393665158371, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45550506, Length=158, Percent_Identity=27.8481012658228, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281361631, Length=175, Percent_Identity=27.4285714285714, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281361633, Length=173, Percent_Identity=27.7456647398844, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281361635, Length=165, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 41121; Mature: 41121

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRRILVGDNERVLVIRKRRFSTILAPGEYRIFTLGRGLEFERHNTKQLILCSDYADTIA
CCCEEEECCCCEEEEEEECCCCEEECCCCEEEEEECCCCEECCCCCCEEEEECCHHHHHH
RQFPALAALHFTVIETGESQVAIVYLDGRLSRVIPPASRVLYFKGAVEVAFRLIDIRAEP
HHHHHHHHHEEEEEECCCCEEEEEEECCCHHHCCCCCHHEEEEHHHHHHHHHHHEECCCC
EVPARLVSALVRLGETRAAFAVIEQGRRGLLYLDGRLIRELQPGAYAFWNSVMTPRVDVL
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCHHHHHHHCCCCCHHHH
EMRRQTVEVPGQEILTRDKVTLRVNVSAVYEIVDAVRARSGVKDVDAHLYRTLQIAVRQT
HHHHHHHCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LGKRTLDEVLAEKVDLDETVSAQVRREMEQYGIRVSAIALKDIILPGDIREILNQVVTAE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEHHHHCCCHHHHHHHHHHHHHH
KQAQANLIRRREETAATRSLLNTAKLMEDNPLLVRMKELETLEKIAEKVEKIHVFGGLKG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCHHH
LLE
HCC
>Mature Secondary Structure
MFRRILVGDNERVLVIRKRRFSTILAPGEYRIFTLGRGLEFERHNTKQLILCSDYADTIA
CCCEEEECCCCEEEEEEECCCCEEECCCCEEEEEECCCCEECCCCCCEEEEECCHHHHHH
RQFPALAALHFTVIETGESQVAIVYLDGRLSRVIPPASRVLYFKGAVEVAFRLIDIRAEP
HHHHHHHHHEEEEEECCCCEEEEEEECCCHHHCCCCCHHEEEEHHHHHHHHHHHEECCCC
EVPARLVSALVRLGETRAAFAVIEQGRRGLLYLDGRLIRELQPGAYAFWNSVMTPRVDVL
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCHHHHHHHCCCCCHHHH
EMRRQTVEVPGQEILTRDKVTLRVNVSAVYEIVDAVRARSGVKDVDAHLYRTLQIAVRQT
HHHHHHHCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LGKRTLDEVLAEKVDLDETVSAQVRREMEQYGIRVSAIALKDIILPGDIREILNQVVTAE
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEHHHHCCCHHHHHHHHHHHHHH
KQAQANLIRRREETAATRSLLNTAKLMEDNPLLVRMKELETLEKIAEKVEKIHVFGGLKG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCHHH
LLE
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]