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The map label for this gene is ygaU [H]

Identifier: 116622531

GI number: 116622531

Start: 4337645

End: 4338058

Strand: Reverse

Name: ygaU [H]

Synonym: Acid_3429

Alternate gene names: 116622531

Gene position: 4338058-4337645 (Counterclockwise)

Preceding gene: 116622533

Following gene: 116622530

Centisome position: 43.53

GC content: 53.62

Gene sequence:

>414_bases
ATGCGCATGGAACTGGAACAACTCAAACAAAAATACGCGCCGGCCCTCGATGCCATTCAGAAAAACAACGTAAGATTAGA
CCACCTGCACGTCCAGGACGGAAAGCTTTTCATGCAGGGAGCGGCCCCAAACGAGAACGCCAAGAACCGCGTCTGGGACG
CCATTAAGAGCGTGGACCCCACGTACAACGATTTGACCTGCGACCTCACCATCGATTCCTCGCTGCCCCAACCGGCCGCT
CAATCAGCCGCTCAGAACTACACCGTGCAGCCCGGCGATTCGCTTTCAAAAATTGCCCAGCGCTTTTACGGAGATGCCAA
TTCGTACATGAAAATCTTCGAAGCCAATAAGAATCAGTTGAAGGATCCCAACAAAATCCAGCCCGGCCAGCAACTCCTGA
TTCCCGCAGCCTGA

Upstream 100 bases:

>100_bases
ATCCGCGTTTACCCGTTCGACCAGCCTTCCACCGTCACCGCAAAAAAGCGCACGGTTCGATAACCAGCGGTCCGGCCTTT
GGAATCCCAGGTGCCCGGGA

Downstream 100 bases:

>100_bases
TCCGGCACAAACCGGGGGCACGCCGCCGAACGTGCCCCCCACCGCGCTCTGAATCCTCCCAATAGAAATTATTCGTGCGG
CCTTCGCGCCGTCCTCTGCC

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRMELEQLKQKYAPALDAIQKNNVRLDHLHVQDGKLFMQGAAPNENAKNRVWDAIKSVDPTYNDLTCDLTIDSSLPQPAA
QSAAQNYTVQPGDSLSKIAQRFYGDANSYMKIFEANKNQLKDPNKIQPGQQLLIPAA

Sequences:

>Translated_137_residues
MRMELEQLKQKYAPALDAIQKNNVRLDHLHVQDGKLFMQGAAPNENAKNRVWDAIKSVDPTYNDLTCDLTIDSSLPQPAA
QSAAQNYTVQPGDSLSKIAQRFYGDANSYMKIFEANKNQLKDPNKIQPGQQLLIPAA
>Mature_137_residues
MRMELEQLKQKYAPALDAIQKNNVRLDHLHVQDGKLFMQGAAPNENAKNRVWDAIKSVDPTYNDLTCDLTIDSSLPQPAA
QSAAQNYTVQPGDSLSKIAQRFYGDANSYMKIFEANKNQLKDPNKIQPGQQLLIPAA

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=108, Percent_Identity=37.962962962963, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 15299; Mature: 15299

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMELEQLKQKYAPALDAIQKNNVRLDHLHVQDGKLFMQGAAPNENAKNRVWDAIKSVDP
CCCHHHHHHHHHCHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHCCC
TYNDLTCDLTIDSSLPQPAAQSAAQNYTVQPGDSLSKIAQRFYGDANSYMKIFEANKNQL
CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHC
KDPNKIQPGQQLLIPAA
CCCCCCCCCCEEECCCC
>Mature Secondary Structure
MRMELEQLKQKYAPALDAIQKNNVRLDHLHVQDGKLFMQGAAPNENAKNRVWDAIKSVDP
CCCHHHHHHHHHCHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHCCC
TYNDLTCDLTIDSSLPQPAAQSAAQNYTVQPGDSLSKIAQRFYGDANSYMKIFEANKNQL
CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHC
KDPNKIQPGQQLLIPAA
CCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]