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The map label for this gene is ydeS [H]

Identifier: 116622512

GI number: 116622512

Start: 4316927

End: 4317517

Strand: Direct

Name: ydeS [H]

Synonym: Acid_3410

Alternate gene names: 116622512

Gene position: 4316927-4317517 (Clockwise)

Preceding gene: 116622506

Following gene: 116622517

Centisome position: 43.32

GC content: 61.08

Gene sequence:

>591_bases
ATGTCACAGACGGTAAAAGGACCCGGTCGTCCGCGGGATGAAGAGGCGCGCCAGCGCATTCTGGATTCGGCGGCGCAGCT
GATGGAGCAGCGCTGCATCGATGAGATCACGGTGGATGCGATCGCGGAGCATTCGGGCGCGGGGAAGGCGACGGTTTACC
GGTGGTGGCCGAATAAGGCGGCGGTATTGATCGAGGCGTTTCGCGAGCGGATTTCGCGCGAAATGCTGTTTCCGGATAGC
GGGGATTTCCGCGCCGATGTGCGCCAGCAGCTGCAGATTTTCACCGAGGTGATTTACTGGGGACGCCGCGGACGGGTCTT
CAGCAGTTTTATTGCGGGTGCGCAGGCCGATCCGGAAATCGCCAAGGCATTTCGCGAGAATTGGATTCGGCCGCGGAGGG
CGGAGGCAAGGAAGCTCTTCGAGCGGTATATCGCGGAGGGCACCGCGCGGGCTGACCTGGATCCGGATCTGGCGGTGGAG
ATGGTTTTTTCGCCGCTGTATTACCGGCTGCTAACGGGGTGGGGAGAGATCACGGCGGAGTACCTGGATCATCTGGTGGA
TACGGTAATGCCGGCGTTCTTGAAGAGTTGA

Upstream 100 bases:

>100_bases
GTCGATTGAGAGCGACTTTGACGATCCACATAGAGTGCCTACCGAAGTGGATGAATTACGAGACGTTTTAGTCTCGTAAA
TTCGTCATGGATGGTGTGAA

Downstream 100 bases:

>100_bases
TATCGGGAGCCATTCGGCCGTGGCATGTGCAAGCCGCTGAAAAGCGGCTGCACGATCGAAAGCCCCCCACGGCGAGCAAC
GGAATACTCCTCGAAAAGCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSQTVKGPGRPRDEEARQRILDSAAQLMEQRCIDEITVDAIAEHSGAGKATVYRWWPNKAAVLIEAFRERISREMLFPDS
GDFRADVRQQLQIFTEVIYWGRRGRVFSSFIAGAQADPEIAKAFRENWIRPRRAEARKLFERYIAEGTARADLDPDLAVE
MVFSPLYYRLLTGWGEITAEYLDHLVDTVMPAFLKS

Sequences:

>Translated_196_residues
MSQTVKGPGRPRDEEARQRILDSAAQLMEQRCIDEITVDAIAEHSGAGKATVYRWWPNKAAVLIEAFRERISREMLFPDS
GDFRADVRQQLQIFTEVIYWGRRGRVFSSFIAGAQADPEIAKAFRENWIRPRRAEARKLFERYIAEGTARADLDPDLAVE
MVFSPLYYRLLTGWGEITAEYLDHLVDTVMPAFLKS
>Mature_195_residues
SQTVKGPGRPRDEEARQRILDSAAQLMEQRCIDEITVDAIAEHSGAGKATVYRWWPNKAAVLIEAFRERISREMLFPDSG
DFRADVRQQLQIFTEVIYWGRRGRVFSSFIAGAQADPEIAKAFRENWIRPRRAEARKLFERYIAEGTARADLDPDLAVEM
VFSPLYYRLLTGWGEITAEYLDHLVDTVMPAFLKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22529; Mature: 22398

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTVKGPGRPRDEEARQRILDSAAQLMEQRCIDEITVDAIAEHSGAGKATVYRWWPNKA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
AVLIEAFRERISREMLFPDSGDFRADVRQQLQIFTEVIYWGRRGRVFSSFIAGAQADPEI
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHH
AKAFRENWIRPRRAEARKLFERYIAEGTARADLDPDLAVEMVFSPLYYRLLTGWGEITAE
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YLDHLVDTVMPAFLKS
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQTVKGPGRPRDEEARQRILDSAAQLMEQRCIDEITVDAIAEHSGAGKATVYRWWPNKA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
AVLIEAFRERISREMLFPDSGDFRADVRQQLQIFTEVIYWGRRGRVFSSFIAGAQADPEI
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHH
AKAFRENWIRPRRAEARKLFERYIAEGTARADLDPDLAVEMVFSPLYYRLLTGWGEITAE
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YLDHLVDTVMPAFLKS
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]