Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 116622486

GI number: 116622486

Start: 4286309

End: 4287121

Strand: Reverse

Name: ompA [H]

Synonym: Acid_3384

Alternate gene names: 116622486

Gene position: 4287121-4286309 (Counterclockwise)

Preceding gene: 116622490

Following gene: 116622485

Centisome position: 43.02

GC content: 58.06

Gene sequence:

>813_bases
GTGAAAGCTGACAGGGAGGTTAAATTGATTAAGTTACGAACTAGTACCGTTTGGATGGTTGCCGTGCCGATTCTGGTGCT
GGCCACCTCCGGTTGCGCCACGAAAAAATACGTGCGTCAGAACATGAACACGGTAAACGCAAAAGTGGACAAACTGGAAA
AACACACGAACGAGAAGATCGCGTATTTGGACAACAAGCTAAATACCGAGATGTCTCAAGCTAATGAACAAATCGCCACC
GCGAACCAGAAGGCCACACAGGCAATGGACGCGGCTCAGCAGGCGCAGGGGACAGCCTCTCGCGCCATGGAGGAGACCGA
GTCGAACAGCGCTAAGATCTCCGCCAACGCCGAGGCGACCAACACCCTGGCCTCCGGAATGGCGAACGCTCTGAATTATC
AACTCGTGGAGCAGGGAGACGTGACCTTCGCGTTCGGCAAAGCCGATCTAAGGCCGGCCGATAAGGCAGCGCTTGACGCG
ATCGTGGCAAAATACAACTCGCTGCCGCGCGGTGTGATCGAGCTCGCGGGCTTTACTGACCCGATTGGATCGGCGAACTT
CAACCTCGCACTGAGCCGCCGGCGCGCGCAAGCAGTCGAGCGGTACCTGGTGAACCAGAAGGTGCCGTTGCGCGCCATTA
ACATCGTCGGACTCGGCAAGGAAATGCCGCCGGCTCCGTTTGCGCCCGACCAGGCGGTGCAGGCTGCCGCTACCACTAAA
GCCGAACGCCACCAGCTGGCTCGGCGTGTGCATATTAACGTTTACGGGGCCGGCGACATTACCCAGGGTACTGCTTCGCG
GTCTCAGCAGTAG

Upstream 100 bases:

>100_bases
GTCGAGCGTATTACGGCGGTAACGGATCCGCTAGGTGGGTAAGCTGGAGACCTCAGACTGAGGTATCTTCGGGAGCCTTG
TTCCCAAAGCGGCGCTACCC

Downstream 100 bases:

>100_bases
CATCTAACCGCTTCAACTAACACCAAACGCATGGTTGATCCGGCCGGCGGTCGTAGCACCGCCGGAGACCGGCCGGCCGG
AAGCCATGCCTCTCTCGCGT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: OMP P5 [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKADREVKLIKLRTSTVWMVAVPILVLATSGCATKKYVRQNMNTVNAKVDKLEKHTNEKIAYLDNKLNTEMSQANEQIAT
ANQKATQAMDAAQQAQGTASRAMEETESNSAKISANAEATNTLASGMANALNYQLVEQGDVTFAFGKADLRPADKAALDA
IVAKYNSLPRGVIELAGFTDPIGSANFNLALSRRRAQAVERYLVNQKVPLRAINIVGLGKEMPPAPFAPDQAVQAAATTK
AERHQLARRVHINVYGAGDITQGTASRSQQ

Sequences:

>Translated_270_residues
MKADREVKLIKLRTSTVWMVAVPILVLATSGCATKKYVRQNMNTVNAKVDKLEKHTNEKIAYLDNKLNTEMSQANEQIAT
ANQKATQAMDAAQQAQGTASRAMEETESNSAKISANAEATNTLASGMANALNYQLVEQGDVTFAFGKADLRPADKAALDA
IVAKYNSLPRGVIELAGFTDPIGSANFNLALSRRRAQAVERYLVNQKVPLRAINIVGLGKEMPPAPFAPDQAVQAAATTK
AERHQLARRVHINVYGAGDITQGTASRSQQ
>Mature_270_residues
MKADREVKLIKLRTSTVWMVAVPILVLATSGCATKKYVRQNMNTVNAKVDKLEKHTNEKIAYLDNKLNTEMSQANEQIAT
ANQKATQAMDAAQQAQGTASRAMEETESNSAKISANAEATNTLASGMANALNYQLVEQGDVTFAFGKADLRPADKAALDA
IVAKYNSLPRGVIELAGFTDPIGSANFNLALSRRRAQAVERYLVNQKVPLRAINIVGLGKEMPPAPFAPDQAVQAAATTK
AERHQLARRVHINVYGAGDITQGTASRSQQ

Specific function: Required For The Action Of Colicins K And L And For The Stabilization Of Mating Aggregates In Conjugation. Serves As A Receptor For A Number Of T-Even Like Phages. Also Acts As A Porin With Low Permeability That Allows Slow Penetration Of Small Solutes.

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=125, Percent_Identity=39.2, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR002368
- InterPro:   IPR006690
- InterPro:   IPR000498
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA; PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 29124; Mature: 29124

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKADREVKLIKLRTSTVWMVAVPILVLATSGCATKKYVRQNMNTVNAKVDKLEKHTNEKI
CCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
AYLDNKLNTEMSQANEQIATANQKATQAMDAAQQAQGTASRAMEETESNSAKISANAEAT
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCHHH
NTLASGMANALNYQLVEQGDVTFAFGKADLRPADKAALDAIVAKYNSLPRGVIELAGFTD
HHHHHHHHHHHHHEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCC
PIGSANFNLALSRRRAQAVERYLVNQKVPLRAINIVGLGKEMPPAPFAPDQAVQAAATTK
CCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
AERHQLARRVHINVYGAGDITQGTASRSQQ
HHHHHHHHEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKADREVKLIKLRTSTVWMVAVPILVLATSGCATKKYVRQNMNTVNAKVDKLEKHTNEKI
CCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
AYLDNKLNTEMSQANEQIATANQKATQAMDAAQQAQGTASRAMEETESNSAKISANAEAT
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCHHH
NTLASGMANALNYQLVEQGDVTFAFGKADLRPADKAALDAIVAKYNSLPRGVIELAGFTD
HHHHHHHHHHHHHEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCC
PIGSANFNLALSRRRAQAVERYLVNQKVPLRAINIVGLGKEMPPAPFAPDQAVQAAATTK
CCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
AERHQLARRVHINVYGAGDITQGTASRSQQ
HHHHHHHHEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]