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The map label for this gene is ycjS [C]

Identifier: 116622433

GI number: 116622433

Start: 4216954

End: 4218243

Strand: Direct

Name: ycjS [C]

Synonym: Acid_3331

Alternate gene names: 116622433

Gene position: 4216954-4218243 (Clockwise)

Preceding gene: 116622431

Following gene: 116622434

Centisome position: 42.31

GC content: 60.93

Gene sequence:

>1290_bases
ATGTCAACTTCATCGCGCAGGAGTTTTCTCGCGGCGAGCACCGCGTTTTCTTTGGGCCATGTGCTGGGAGCCAACGACAA
AGTGAACGTGGGCATTGTCGGGATCGGCGGCCGCGGGAACGATCATATTAAGAGCTATGCCACGCTGCCGGATGCGCGGA
TCGTGGCGCTTTGCGATGTGAACCAGGCGGCGCTCGAGGTGGGCCAGGCGAGCGTGAAGCGGCTCACGGGGGAACAGCCC
GCGGGCTATGACGACATGCGGAAGCTGTTCGCGGACAAGAATGTGGATGCGGTCTCGATCACGACACCCAATCACTGGCA
TGCGCTGGCCACGATCTGGGCCTGCCAGGCGGGGAAGGATGTCTACTGCGAGAAGCCGGCGTGCTACAACGTGCACGAAG
GCGAGCGCATGATCGAGGTGGCGCGCAAGACCGGGCGAATGGTGCAAATCGGGTCGCAGAGCCGCAGCCTGGAATACAAG
ATGAAGGCGATCCAACTGCTGCACGAAGGGGTGATCGGGAAAGTTTACCTGGCGAAGGGGCTGTGCTTCAAGCGGCGTCC
TTCAATCGGGCATGCGGAGAACGAGCCTGTGCCGGCGGGAGTGAACTGGGATCTGTTCCTGGGTCCGGCGCCCATGCGGC
CGTTCAACCGTTTGCGTTTCAAATACAACTGGCACTGGTTCTGGGACACAGGCAACGGAGATATCGGCAACCAGGGAGTG
CATGAGATGGACATCGCGCGATGGGGGCTTGGAGAAGTCATGTTTCCGAAGAGCGTGGTCTCGACAGGCGGCAAGTACGT
TTATACGGACGATCAGGAAACACCGAACACACAGCTGGCCACGTTCGATTACGGCGATAAAGAGATCGTGTTCGAGGTGC
GCGGACTAAATACGGGCGGAGAAGGCAGCATCGCGAGAGGCGGCGGCAACTACGTGGGCAATCTGTTTTACGGCGCCGAT
GGCTGGATGGGAATCGACGGCAATGGCTTTAAGGTCTACAAGGGCGACAAAGAGGAACTCGTGATGGACGAGAAGAAGAC
GGCCGGGGCCGACACGCCGCCGCATATGGCGAACTTTCTGGCCGCCTGCCGCTCGCGCAATTACAAGGACCTGCATGCCG
ATGTCGCGATCGGCGTGATGAGCGCGGATCTCTGCCACCTGGCCAACGCAAGCTATCGGGTGGGGCGCAAGCTTTCCGTG
GACGCCGCCAAGGGCCGGTTCACGGGCGACGGCGCGGCGGAGGCGAACCTGCTGTTGACGCGAAAGTACAGGGCTCCGTA
TGTCGTCTGA

Upstream 100 bases:

>100_bases
TAGAGTTACGACTACACTACTGCGCAACATACTGCGATTTTAGCAAAGCGCCCAAAACCATTTCACAGCCTGTTATTCTA
TTCGCCGAGGACGACCAGGA

Downstream 100 bases:

>100_bases
GCGCGCGATTCTCACCACCACTGTAGGCAGCTATCCGGTGCCGGACTGGCTGCCGGCGCTGCCCAGCGAGCAGGCGCGGC
TGGATGCGACGCGCGTGGTG

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSTSSRRSFLAASTAFSLGHVLGANDKVNVGIVGIGGRGNDHIKSYATLPDARIVALCDVNQAALEVGQASVKRLTGEQP
AGYDDMRKLFADKNVDAVSITTPNHWHALATIWACQAGKDVYCEKPACYNVHEGERMIEVARKTGRMVQIGSQSRSLEYK
MKAIQLLHEGVIGKVYLAKGLCFKRRPSIGHAENEPVPAGVNWDLFLGPAPMRPFNRLRFKYNWHWFWDTGNGDIGNQGV
HEMDIARWGLGEVMFPKSVVSTGGKYVYTDDQETPNTQLATFDYGDKEIVFEVRGLNTGGEGSIARGGGNYVGNLFYGAD
GWMGIDGNGFKVYKGDKEELVMDEKKTAGADTPPHMANFLAACRSRNYKDLHADVAIGVMSADLCHLANASYRVGRKLSV
DAAKGRFTGDGAAEANLLLTRKYRAPYVV

Sequences:

>Translated_429_residues
MSTSSRRSFLAASTAFSLGHVLGANDKVNVGIVGIGGRGNDHIKSYATLPDARIVALCDVNQAALEVGQASVKRLTGEQP
AGYDDMRKLFADKNVDAVSITTPNHWHALATIWACQAGKDVYCEKPACYNVHEGERMIEVARKTGRMVQIGSQSRSLEYK
MKAIQLLHEGVIGKVYLAKGLCFKRRPSIGHAENEPVPAGVNWDLFLGPAPMRPFNRLRFKYNWHWFWDTGNGDIGNQGV
HEMDIARWGLGEVMFPKSVVSTGGKYVYTDDQETPNTQLATFDYGDKEIVFEVRGLNTGGEGSIARGGGNYVGNLFYGAD
GWMGIDGNGFKVYKGDKEELVMDEKKTAGADTPPHMANFLAACRSRNYKDLHADVAIGVMSADLCHLANASYRVGRKLSV
DAAKGRFTGDGAAEANLLLTRKYRAPYVV
>Mature_428_residues
STSSRRSFLAASTAFSLGHVLGANDKVNVGIVGIGGRGNDHIKSYATLPDARIVALCDVNQAALEVGQASVKRLTGEQPA
GYDDMRKLFADKNVDAVSITTPNHWHALATIWACQAGKDVYCEKPACYNVHEGERMIEVARKTGRMVQIGSQSRSLEYKM
KAIQLLHEGVIGKVYLAKGLCFKRRPSIGHAENEPVPAGVNWDLFLGPAPMRPFNRLRFKYNWHWFWDTGNGDIGNQGVH
EMDIARWGLGEVMFPKSVVSTGGKYVYTDDQETPNTQLATFDYGDKEIVFEVRGLNTGGEGSIARGGGNYVGNLFYGADG
WMGIDGNGFKVYKGDKEELVMDEKKTAGADTPPHMANFLAACRSRNYKDLHADVAIGVMSADLCHLANASYRVGRKLSVD
AAKGRFTGDGAAEANLLLTRKYRAPYVV

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=167, Percent_Identity=28.1437125748503, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 46882; Mature: 46750

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSSRRSFLAASTAFSLGHVLGANDKVNVGIVGIGGRGNDHIKSYATLPDARIVALCDV
CCCCCHHHEEHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEECC
NQAALEVGQASVKRLTGEQPAGYDDMRKLFADKNVDAVSITTPNHWHALATIWACQAGKD
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHEEHHCCCCC
VYCEKPACYNVHEGERMIEVARKTGRMVQIGSQSRSLEYKMKAIQLLHEGVIGKVYLAKG
EEECCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
LCFKRRPSIGHAENEPVPAGVNWDLFLGPAPMRPFNRLRFKYNWHWFWDTGNGDIGNQGV
CCEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHEEEEEEEEEEEECCCCCCCCCCC
HEMDIARWGLGEVMFPKSVVSTGGKYVYTDDQETPNTQLATFDYGDKEIVFEVRGLNTGG
CHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCC
EGSIARGGGNYVGNLFYGADGWMGIDGNGFKVYKGDKEELVMDEKKTAGADTPPHMANFL
CCCEECCCCCEEEEEEECCCCEEEECCCCEEEEECCHHHHEECCCCCCCCCCCHHHHHHH
AACRSRNYKDLHADVAIGVMSADLCHLANASYRVGRKLSVDAAKGRFTGDGAAEANLLLT
HHHHCCCCCCEEHHEEEEHHHHHHHHHCCCCHHCCCEEEEECCCCCCCCCCCCCCEEEEE
RKYRAPYVV
EECCCCCCC
>Mature Secondary Structure 
STSSRRSFLAASTAFSLGHVLGANDKVNVGIVGIGGRGNDHIKSYATLPDARIVALCDV
CCCCHHHEEHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEECC
NQAALEVGQASVKRLTGEQPAGYDDMRKLFADKNVDAVSITTPNHWHALATIWACQAGKD
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHEEHHCCCCC
VYCEKPACYNVHEGERMIEVARKTGRMVQIGSQSRSLEYKMKAIQLLHEGVIGKVYLAKG
EEECCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
LCFKRRPSIGHAENEPVPAGVNWDLFLGPAPMRPFNRLRFKYNWHWFWDTGNGDIGNQGV
CCEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHEEEEEEEEEEEECCCCCCCCCCC
HEMDIARWGLGEVMFPKSVVSTGGKYVYTDDQETPNTQLATFDYGDKEIVFEVRGLNTGG
CHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCC
EGSIARGGGNYVGNLFYGADGWMGIDGNGFKVYKGDKEELVMDEKKTAGADTPPHMANFL
CCCEECCCCCEEEEEEECCCCEEEECCCCEEEEECCHHHHEECCCCCCCCCCCHHHHHHH
AACRSRNYKDLHADVAIGVMSADLCHLANASYRVGRKLSVDAAKGRFTGDGAAEANLLLT
HHHHCCCCCCEEHHEEEEHHHHHHHHHCCCCHHCCCEEEEECCCCCCCCCCCCCCEEEEE
RKYRAPYVV
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA