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The map label for this gene is 116621816

Identifier: 116621816

GI number: 116621816

Start: 3421263

End: 3421799

Strand: Reverse

Name: 116621816

Synonym: Acid_2698

Alternate gene names: NA

Gene position: 3421799-3421263 (Counterclockwise)

Preceding gene: 116621818

Following gene: 116621815

Centisome position: 34.34

GC content: 64.8

Gene sequence:

>537_bases
GTGAACGGACCGAGCAGAGCAATCGCCCAGATGGAAACCCGCGCGGCGGCATTCGATTTCGAGAGCGCATTTCACGCCCA
TTACGCGCGCATTGCCCGCGTGATCGCCCGCGTCATCCGCGACCCGGGACGCGCGGAGGAGTTGGCGGTAGAGGTGCTCT
GGAAGTTCTGGCGAACCCCGGGAGCGCATGGCGAACAGGCGGGCGGCTGGCTTTACCGGACGGCCGTTCGTACCAGCCTC
AACGAACTGCGCCGCAAGGTGCGGGGCGACCGGCACGAGAGTCTGACGGACTCGACTCCGGGTGCGCCGACACCGGAGGA
CGTACGGCGGGCGCGCGAGGAGCAGGAGCATGTGCGGACGGTGCTGGCGGCGCTCGATTCGCGTCAGGCCGAACTGCTTT
TGTTGCGTAGCAGCGGCCTGAGTTACGAAGAAGTGGCGGCGGCTCTTGACCTGAATCCGGCCTCGGTAGGCACACTGCTC
AGCCGCGCACAGCAAGCATTCCGAAAGGAGTTTATCAAACGATATGGCGAACAATGA

Upstream 100 bases:

>100_bases
GACCGAATGACGCAGCGGACCGCCTGGGAGTGGAGGGAGATTTCACAACATTTTCGTGGCCAGCCTGTCACAAAGCGAAG
CCCGGCGGTGTTGAGCTATT

Downstream 100 bases:

>100_bases
TAAGTGGGTAGACGACCGGTTGAATTCTTTGACTCCTCCGGCGGAGTGGCGGCCCGATGCGGCGCGCGCGATCGGCAAAG
TGAGGGAACGCGACATGATG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor SigX; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNGPSRAIAQMETRAAAFDFESAFHAHYARIARVIARVIRDPGRAEELAVEVLWKFWRTPGAHGEQAGGWLYRTAVRTSL
NELRRKVRGDRHESLTDSTPGAPTPEDVRRAREEQEHVRTVLAALDSRQAELLLLRSSGLSYEEVAAALDLNPASVGTLL
SRAQQAFRKEFIKRYGEQ

Sequences:

>Translated_178_residues
MNGPSRAIAQMETRAAAFDFESAFHAHYARIARVIARVIRDPGRAEELAVEVLWKFWRTPGAHGEQAGGWLYRTAVRTSL
NELRRKVRGDRHESLTDSTPGAPTPEDVRRAREEQEHVRTVLAALDSRQAELLLLRSSGLSYEEVAAALDLNPASVGTLL
SRAQQAFRKEFIKRYGEQ
>Mature_178_residues
MNGPSRAIAQMETRAAAFDFESAFHAHYARIARVIARVIRDPGRAEELAVEVLWKFWRTPGAHGEQAGGWLYRTAVRTSL
NELRRKVRGDRHESLTDSTPGAPTPEDVRRAREEQEHVRTVLAALDSRQAELLLLRSSGLSYEEVAAALDLNPASVGTLL
SRAQQAFRKEFIKRYGEQ

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20009; Mature: 20009

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGPSRAIAQMETRAAAFDFESAFHAHYARIARVIARVIRDPGRAEELAVEVLWKFWRTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
GAHGEQAGGWLYRTAVRTSLNELRRKVRGDRHESLTDSTPGAPTPEDVRRAREEQEHVRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
VLAALDSRQAELLLLRSSGLSYEEVAAALDLNPASVGTLLSRAQQAFRKEFIKRYGEQ
HHHHHHCCHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNGPSRAIAQMETRAAAFDFESAFHAHYARIARVIARVIRDPGRAEELAVEVLWKFWRTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
GAHGEQAGGWLYRTAVRTSLNELRRKVRGDRHESLTDSTPGAPTPEDVRRAREEQEHVRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
VLAALDSRQAELLLLRSSGLSYEEVAAALDLNPASVGTLLSRAQQAFRKEFIKRYGEQ
HHHHHHCCHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA