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The map label for this gene is rpoE [H]

Identifier: 116621600

GI number: 116621600

Start: 3150933

End: 3151439

Strand: Reverse

Name: rpoE [H]

Synonym: Acid_2482

Alternate gene names: 116621600

Gene position: 3151439-3150933 (Counterclockwise)

Preceding gene: 116621601

Following gene: 116621599

Centisome position: 31.62

GC content: 62.52

Gene sequence:

>507_bases
ATGAATCACGCGGAGCGAGAACGGCTTTTCCTGGAACTCTTCCAGCGCCACAAAGCGCCGGTCCAGCGCCTCTGCTTCGC
CTACCTCAACTCCGCCGCCGAAGTCGAGGATCTCTTCCAGGAAATCATGTCCAACGTCTGGAACGCCCTTCCCGCCTTCC
GCGGCGAATCCCAGCCCGGTACCTGGCTCTACCGCATCGCCGTCAACACCGCGCTCCTCTACCGCCGCAAATGGAAGCGC
GGTGAAGAGCTACCCGAACTCGCCGACCAAACCGCCGGCGTCCTGCAGAATCTCGAGGACCAGGAGCGCCTCGACGCGCT
CCGCGCCGCCATCGCCGAACTCCCCGACCAGGATCGCCTTGTGATCACGCTCCTCCTCGAAGGCCTCAGCTACCGCGAGA
TCGCCGAGGTCACCGGCCTCACCGTGAACTACGTCGGTGTCAAACTTTCGCGCATCAAACATGCCATCGAACAACGCATG
ACGGAGGTCAACCATGGCACGGTTTGA

Upstream 100 bases:

>100_bases
AAACGCGCGTCACCTTCGCCGCGAACCGCGACCGTCAGGGAGCGATCTAAATTTCCCTGTAATAAATTCTCCGCTCCGCT
CTCTAATACACTGAGAGCGA

Downstream 100 bases:

>100_bases
AGACCTGCAGACTCTCTGGCAGCAACAGCCTGTGCGCACTCTCGCGGCGCCTCAGGCTGCCGAGCTGACCGCCGCCTTCC
GCCGCTACGGCCGCCGCCAC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNHAERERLFLELFQRHKAPVQRLCFAYLNSAAEVEDLFQEIMSNVWNALPAFRGESQPGTWLYRIAVNTALLYRRKWKR
GEELPELADQTAGVLQNLEDQERLDALRAAIAELPDQDRLVITLLLEGLSYREIAEVTGLTVNYVGVKLSRIKHAIEQRM
TEVNHGTV

Sequences:

>Translated_168_residues
MNHAERERLFLELFQRHKAPVQRLCFAYLNSAAEVEDLFQEIMSNVWNALPAFRGESQPGTWLYRIAVNTALLYRRKWKR
GEELPELADQTAGVLQNLEDQERLDALRAAIAELPDQDRLVITLLLEGLSYREIAEVTGLTVNYVGVKLSRIKHAIEQRM
TEVNHGTV
>Mature_168_residues
MNHAERERLFLELFQRHKAPVQRLCFAYLNSAAEVEDLFQEIMSNVWNALPAFRGESQPGTWLYRIAVNTALLYRRKWKR
GEELPELADQTAGVLQNLEDQERLDALRAAIAELPDQDRLVITLLLEGLSYREIAEVTGLTVNYVGVKLSRIKHAIEQRM
TEVNHGTV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=168, Percent_Identity=34.5238095238095, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19330; Mature: 19330

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHAERERLFLELFQRHKAPVQRLCFAYLNSAAEVEDLFQEIMSNVWNALPAFRGESQPG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TWLYRIAVNTALLYRRKWKRGEELPELADQTAGVLQNLEDQERLDALRAAIAELPDQDRL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
VITLLLEGLSYREIAEVTGLTVNYVGVKLSRIKHAIEQRMTEVNHGTV
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNHAERERLFLELFQRHKAPVQRLCFAYLNSAAEVEDLFQEIMSNVWNALPAFRGESQPG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TWLYRIAVNTALLYRRKWKRGEELPELADQTAGVLQNLEDQERLDALRAAIAELPDQDRL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
VITLLLEGLSYREIAEVTGLTVNYVGVKLSRIKHAIEQRMTEVNHGTV
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]