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The map label for this gene is 116621588

Identifier: 116621588

GI number: 116621588

Start: 3139001

End: 3139486

Strand: Direct

Name: 116621588

Synonym: Acid_2470

Alternate gene names: NA

Gene position: 3139001-3139486 (Clockwise)

Preceding gene: 116621584

Following gene: 116621589

Centisome position: 31.5

GC content: 62.76

Gene sequence:

>486_bases
ATGGCCCTCCGGTACATGAAGAACGAAGCCCAGGGAAATTCTCTCCAGGCCACCGCATTGGTCCATGAGGTTTACCTCCG
GCTGGTTGGCGTGAACAACGTGGAATGGCAGGCGCGCGCCCAGTTCTTTGCCATCGTGGCGCAGATGATGCGGCGCATTC
TGGTGGATGCCGCTCGCCTGCGCGGTTCGCGCCGCCAAGGCGGAATACCGATCAAAGTGAATCTGGATCAATCCGCCTTG
TTGTCACCGGCGCCCGACCGGGCCCTGCTCGCTCTCGACGAGGCACTGACTGCTTTTTCGAAACTGGCGCCCCGTCAGGC
CAAGGTCGTCGAACTGCGTTATTTCGGCGGATTGACCGATGAGGAGATCGTCTCCGCTCTCAACATCTCGCCGCGCACCG
CCAGGCGCGATTGGCAGTTCGCCAAGGCCTGGCTGCTGCGCGAGCTAAGCCCCGCCATCGCGAAACCCTCGGGGACCGAG
GCGTGA

Upstream 100 bases:

>100_bases
ACGCGCGGAAGAAATCACACACTTACTGAAGGCCTGGGCCGGGGGCGACGAAGCCGCCCTGATCCGGCTGACCGAGCAGG
TCTATCCGGAACTGCGGCTG

Downstream 100 bases:

>100_bases
CTCCCGAGCGCGTCCGGCAAATCGAGGACCTGTACCACGCGGCTCGCGAGGCCGCTCCCCAGGAGCGCGCCGCTCTGCTC
GCGCAAGCGGATCCGGACTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-E Factor; Sigma-70 Region 4 Family; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MALRYMKNEAQGNSLQATALVHEVYLRLVGVNNVEWQARAQFFAIVAQMMRRILVDAARLRGSRRQGGIPIKVNLDQSAL
LSPAPDRALLALDEALTAFSKLAPRQAKVVELRYFGGLTDEEIVSALNISPRTARRDWQFAKAWLLRELSPAIAKPSGTE
A

Sequences:

>Translated_161_residues
MALRYMKNEAQGNSLQATALVHEVYLRLVGVNNVEWQARAQFFAIVAQMMRRILVDAARLRGSRRQGGIPIKVNLDQSAL
LSPAPDRALLALDEALTAFSKLAPRQAKVVELRYFGGLTDEEIVSALNISPRTARRDWQFAKAWLLRELSPAIAKPSGTE
A
>Mature_160_residues
ALRYMKNEAQGNSLQATALVHEVYLRLVGVNNVEWQARAQFFAIVAQMMRRILVDAARLRGSRRQGGIPIKVNLDQSALL
SPAPDRALLALDEALTAFSKLAPRQAKVVELRYFGGLTDEEIVSALNISPRTARRDWQFAKAWLLRELSPAIAKPSGTEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17884; Mature: 17753

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRYMKNEAQGNSLQATALVHEVYLRLVGVNNVEWQARAQFFAIVAQMMRRILVDAARL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RGSRRQGGIPIKVNLDQSALLSPAPDRALLALDEALTAFSKLAPRQAKVVELRYFGGLTD
CCCCCCCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEEHCCCCCCH
EEIVSALNISPRTARRDWQFAKAWLLRELSPAIAKPSGTEA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ALRYMKNEAQGNSLQATALVHEVYLRLVGVNNVEWQARAQFFAIVAQMMRRILVDAARL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RGSRRQGGIPIKVNLDQSALLSPAPDRALLALDEALTAFSKLAPRQAKVVELRYFGGLTD
CCCCCCCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEEHCCCCCCH
EEIVSALNISPRTARRDWQFAKAWLLRELSPAIAKPSGTEA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA