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The map label for this gene is rfaQ [C]

Identifier: 116621474

GI number: 116621474

Start: 3002666

End: 3003565

Strand: Reverse

Name: rfaQ [C]

Synonym: Acid_2356

Alternate gene names: 116621474

Gene position: 3003565-3002666 (Counterclockwise)

Preceding gene: 116621475

Following gene: 116621473

Centisome position: 30.14

GC content: 67.78

Gene sequence:

>900_bases
GTGGACTGCGTTCTGGATTCTTTGCCGCGAGGTAGCCGGGTCGCCATCCTCAGGCTCCGGAGCCTGGGAGATTGCGTCCT
CACCACACCCGCGCTCTACATCCTGAAACGCTTCCGCCCCGATCTCCACCTCGCCATCTTCGTCGAAGATCGCTTCCGTG
AAATCTTCGAGGGCAGCCCCGATCTCGACCAGATCCTGGCGCCCGATCTTCCCACCCTGCGCCGCTTCCGCCCGCAGCTC
TGCCTCAATCTTCACGGCGGCACGCGCAGCACCTGGATGACCGAGCTCTCGGGCGCCCGTTACCGCGCCGGCTTCACGCA
TTTCCGCCAGCAGTTCGTCTACAACGTCCGCATTCCCCGCGCCCAGGAGATCCTCGGCGTCGAGCGCAAGGTCCACACCG
CCGAGCACCTCGCCTCCGCGATCTTCTTCCTCGGCGCGCCGGCCGTCGAGATCCCGCGCGCCATTCTGGTCCCGTCGCAG
CCCGCGGCGCCGCTGCCCGTCCCCACCGCGATCATTCACCCGCTCGCCTCCGCTCCCGAAAAAACCTGGCCCGCCGAGAA
CTTCCTGGCCGTCGCCAAACACCTGGAGCAGTCCGGCATCGAGCCCATCTTCATCGGCGCACACGCCGACGATCTCTCGC
CCTTCGCCCGCTACCAGACCATCCAGGGCGCGCCGCTCTCGCAAATCAAGAACCTGCTGGCCGCCGCATCCCTCTTCATC
GGCAACGATTCCGGGCCCGCCCATATGGCCGCGGCCTTCGGACTCCCGTGCGCCGTCATCTTCAGCGCCAGCGATCCGGA
TATCTGGGGCCCCTGGCGAACCGCCGGCGAAGTGGTGCCGGCGCCCGCCTCCACCGACCAGGTGCTGGACGCACTCCACC
GGCTCAAGGCGGCCGCATGA

Upstream 100 bases:

>100_bases
CAACAGCGGCTTGAAGTGCGTCGAATGCCATCGCGTGTACCCCATCCGCGACGACATTCCCGTCATGCTGGTGGACGAGG
CGAAAATCGAAGAATAGGCC

Downstream 100 bases:

>100_bases
CCCAGATCCTGCGCCTCCTCTCTTACGGACGCAAATTCTGGCCGCAGATTCTCCTCTCCGTCTTCCTGATGGCCCTCGCG
GGCGCGGCGCAGGGCACCAT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Lipopolysaccharide Heptosyltransferase III; Lipopolysaccharide Heptosyltransferase II; Lipopolysaccharide Heptosyltransferase I; Glycosyltransferase; Glycosyl Transferase; Heptosyl III Transferase WaaQ; ADP-Heptose-LPS Heptosyltransferase II RfaF; Heptosyltransferase Family; Heptosyltransferase Family Protein; Heptosyl III Transferase; ADP-Heptose Of LPS Heptosyltransferase; ADP-HeptoseLPS Heptosyltransferase II; Lipopolysaccharide Core Biosynthesis Heptosyltransferase; RfaF Protein; Heptosyltransferase II Putatative; Lipopolysaccharide Biosynthesis Protein; LPS Biosynthesis Related Glycosyltransferase; Lipopolysaccharide Core Biosynthesis Protein; ADP-HeptoseLPS Heptosyltransferase; ADP-Heptose-LPS Heptosyltransferase II; Family 9 Glycosyl Transferase

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDCVLDSLPRGSRVAILRLRSLGDCVLTTPALYILKRFRPDLHLAIFVEDRFREIFEGSPDLDQILAPDLPTLRRFRPQL
CLNLHGGTRSTWMTELSGARYRAGFTHFRQQFVYNVRIPRAQEILGVERKVHTAEHLASAIFFLGAPAVEIPRAILVPSQ
PAAPLPVPTAIIHPLASAPEKTWPAENFLAVAKHLEQSGIEPIFIGAHADDLSPFARYQTIQGAPLSQIKNLLAAASLFI
GNDSGPAHMAAAFGLPCAVIFSASDPDIWGPWRTAGEVVPAPASTDQVLDALHRLKAAA

Sequences:

>Translated_299_residues
MDCVLDSLPRGSRVAILRLRSLGDCVLTTPALYILKRFRPDLHLAIFVEDRFREIFEGSPDLDQILAPDLPTLRRFRPQL
CLNLHGGTRSTWMTELSGARYRAGFTHFRQQFVYNVRIPRAQEILGVERKVHTAEHLASAIFFLGAPAVEIPRAILVPSQ
PAAPLPVPTAIIHPLASAPEKTWPAENFLAVAKHLEQSGIEPIFIGAHADDLSPFARYQTIQGAPLSQIKNLLAAASLFI
GNDSGPAHMAAAFGLPCAVIFSASDPDIWGPWRTAGEVVPAPASTDQVLDALHRLKAAA
>Mature_299_residues
MDCVLDSLPRGSRVAILRLRSLGDCVLTTPALYILKRFRPDLHLAIFVEDRFREIFEGSPDLDQILAPDLPTLRRFRPQL
CLNLHGGTRSTWMTELSGARYRAGFTHFRQQFVYNVRIPRAQEILGVERKVHTAEHLASAIFFLGAPAVEIPRAILVPSQ
PAAPLPVPTAIIHPLASAPEKTWPAENFLAVAKHLEQSGIEPIFIGAHADDLSPFARYQTIQGAPLSQIKNLLAAASLFI
GNDSGPAHMAAAFGLPCAVIFSASDPDIWGPWRTAGEVVPAPASTDQVLDALHRLKAAA

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 32649; Mature: 32649

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCVLDSLPRGSRVAILRLRSLGDCVLTTPALYILKRFRPDLHLAIFVEDRFREIFEGSP
CCCCCCCCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHCCCC
DLDQILAPDLPTLRRFRPQLCLNLHGGTRSTWMTELSGARYRAGFTHFRQQFVYNVRIPR
CHHHHHCCCCHHHHHHCHHHEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
AQEILGVERKVHTAEHLASAIFFLGAPAVEIPRAILVPSQPAAPLPVPTAIIHPLASAPE
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCCCCCCHHHHHHHHCCCC
KTWPAENFLAVAKHLEQSGIEPIFIGAHADDLSPFARYQTIQGAPLSQIKNLLAAASLFI
CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC
GNDSGPAHMAAAFGLPCAVIFSASDPDIWGPWRTAGEVVPAPASTDQVLDALHRLKAAA
CCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDCVLDSLPRGSRVAILRLRSLGDCVLTTPALYILKRFRPDLHLAIFVEDRFREIFEGSP
CCCCCCCCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHCCCC
DLDQILAPDLPTLRRFRPQLCLNLHGGTRSTWMTELSGARYRAGFTHFRQQFVYNVRIPR
CHHHHHCCCCHHHHHHCHHHEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
AQEILGVERKVHTAEHLASAIFFLGAPAVEIPRAILVPSQPAAPLPVPTAIIHPLASAPE
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCCCCCCHHHHHHHHCCCC
KTWPAENFLAVAKHLEQSGIEPIFIGAHADDLSPFARYQTIQGAPLSQIKNLLAAASLFI
CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC
GNDSGPAHMAAAFGLPCAVIFSASDPDIWGPWRTAGEVVPAPASTDQVLDALHRLKAAA
CCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA