| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is gdhII [H]
Identifier: 116621454
GI number: 116621454
Start: 2980783
End: 2981550
Strand: Reverse
Name: gdhII [H]
Synonym: Acid_2336
Alternate gene names: 116621454
Gene position: 2981550-2980783 (Counterclockwise)
Preceding gene: 116621455
Following gene: 116621449
Centisome position: 29.92
GC content: 64.71
Gene sequence:
>768_bases ATGAGATTGAGTGGGAAGACCGCCCTGGTAACCGGCAGCGACCAGGGAATCGGGCAAGGCATCGCGCTGCGCCTCGCCGA AGAGGGCGCGGACGTGGTGGTGAACTATCGCAAGAACCGCGACGGCGCCGAAACCACGCGCGCGCAGATCGAGAAGCTGG GGCGGCGCACCGCATCCATACAGGCCGACGTCGGCCAGGTCGCCGACGCCCGCCGCCTCGTCGAAGAGTCCGTCGCCGCG CTCGGCGGCCTGGACATTCTGGTCAACAATGCCGGCATCGAAAAGAACGCCTCGTTCGTGGACGTCACCGAGGAAGACTA CAACGCAGTGATCGCCGTCAACATGTCCGGGCCGTTCTTCTCCACGCAGACCTTCGCGCGGCACCGCCGCGACGTCAAGG CCGGCGGCAAGGTGATCAACATCAGCTCCGTGCACGAAGAGCTTCCCTTCCCCCATTTCACGGCCTACTGCATGGCCAAA GGCGGCTTGAAGATGATGATGCGCAACCTCTCGATCGAGCTCGCGCCGCTCGGCATCACTATCAACAATGTGGCCCCCGG CGCGATCCAGACCCCCATCAACCAGAAGCTGCTCAGCGATCCGAAGCTGCTCGAGCCCCTGCTCGCCAATATTCCGCTCA AGCGCCTCGGCCAGCCCGCCGATGTCGCCGGCGTGGTGGCCTTCCTCGCCTCGCAAGACGCCGACTACATCACCGGCACC ACCATCGTCGTCGATGGCGGCCTCCTCTGGAACTACAGCGAGCAGTAG
Upstream 100 bases:
>100_bases AGGCCGTGATGTCGCGCAGCCGCCTCTACTGCTTCGAGCCATGTTCGATCCGCTACATCGATAACACCCGCGGCTTTGGC TTCAAGTGTACGGTAGAGAG
Downstream 100 bases:
>100_bases CGCCGACGAGCCGGACCCAGCGAGCTTCGCTCGACTGCGGTCGCGGTTCGTCCTACACCACTTCCAGAATCAGGCACTTC AGATAGAGGGTCTCCGGCAC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: GLCDH-II [H]
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MRLSGKTALVTGSDQGIGQGIALRLAEEGADVVVNYRKNRDGAETTRAQIEKLGRRTASIQADVGQVADARRLVEESVAA LGGLDILVNNAGIEKNASFVDVTEEDYNAVIAVNMSGPFFSTQTFARHRRDVKAGGKVINISSVHEELPFPHFTAYCMAK GGLKMMMRNLSIELAPLGITINNVAPGAIQTPINQKLLSDPKLLEPLLANIPLKRLGQPADVAGVVAFLASQDADYITGT TIVVDGGLLWNYSEQ
Sequences:
>Translated_255_residues MRLSGKTALVTGSDQGIGQGIALRLAEEGADVVVNYRKNRDGAETTRAQIEKLGRRTASIQADVGQVADARRLVEESVAA LGGLDILVNNAGIEKNASFVDVTEEDYNAVIAVNMSGPFFSTQTFARHRRDVKAGGKVINISSVHEELPFPHFTAYCMAK GGLKMMMRNLSIELAPLGITINNVAPGAIQTPINQKLLSDPKLLEPLLANIPLKRLGQPADVAGVVAFLASQDADYITGT TIVVDGGLLWNYSEQ >Mature_255_residues MRLSGKTALVTGSDQGIGQGIALRLAEEGADVVVNYRKNRDGAETTRAQIEKLGRRTASIQADVGQVADARRLVEESVAA LGGLDILVNNAGIEKNASFVDVTEEDYNAVIAVNMSGPFFSTQTFARHRRDVKAGGKVINISSVHEELPFPHFTAYCMAK GGLKMMMRNLSIELAPLGITINNVAPGAIQTPINQKLLSDPKLLEPLLANIPLKRLGQPADVAGVVAFLASQDADYITGT TIVVDGGLLWNYSEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=39.4308943089431, Blast_Score=165, Evalue=3e-41, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=38.0392156862745, Blast_Score=140, Evalue=1e-33, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=33.8709677419355, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=30.6451612903226, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=31.4741035856574, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=32.9218106995885, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=36.4640883977901, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=33.6683417085427, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=33.502538071066, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI4504505, Length=219, Percent_Identity=30.5936073059361, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=28.1746031746032, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=30.5019305019305, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=30.5, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4503301, Length=251, Percent_Identity=27.8884462151394, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=26.1538461538462, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI209862901, Length=215, Percent_Identity=27.4418604651163, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI19923983, Length=215, Percent_Identity=27.4418604651163, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40254986, Length=181, Percent_Identity=27.6243093922652, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI142976729, Length=180, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=30.4597701149425, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI119392083, Length=211, Percent_Identity=26.5402843601896, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4557649, Length=201, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI210032110, Length=178, Percent_Identity=26.4044943820225, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI50726952, Length=213, Percent_Identity=30.5164319248826, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI146231950, Length=247, Percent_Identity=28.7449392712551, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI4504503, Length=215, Percent_Identity=28.8372093023256, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI225579078, Length=209, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI44680136, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI44680133, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI17738292, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4503817, Length=200, Percent_Identity=26, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI223718074, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI83715985, Length=259, Percent_Identity=28.957528957529, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=37.1428571428571, Blast_Score=171, Evalue=3e-44, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=37.9032258064516, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=35.6275303643725, Blast_Score=154, Evalue=4e-39, Organism=Escherichia coli, GI87082100, Length=263, Percent_Identity=33.8403041825095, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=37.0967741935484, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=34.6774193548387, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=33.9920948616601, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.9838056680162, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=34.0080971659919, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=33.0739299610895, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=30.3846153846154, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787545, Length=256, Percent_Identity=26.5625, Blast_Score=71, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=37.0229007633588, Blast_Score=135, Evalue=2e-32, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=34.7826086956522, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=33.2, Blast_Score=128, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=33.8709677419355, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=32.9268292682927, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=33.5849056603774, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=34.3396226415094, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=33.1983805668016, Blast_Score=121, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=33.4558823529412, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=31.7164179104478, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=33.2075471698113, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=30.6818181818182, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=31.7164179104478, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=30.9160305343511, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=32.183908045977, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=30.2238805970149, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=33.0827067669173, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=32.3420074349442, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=30.3149606299213, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17565030, Length=271, Percent_Identity=33.9483394833948, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=30.5555555555556, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=31.1787072243346, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17564282, Length=209, Percent_Identity=30.1435406698565, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=28.1368821292776, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=31.3207547169811, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI71982365, Length=207, Percent_Identity=31.4009661835749, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=28.4046692607004, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=27.843137254902, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=27.3408239700375, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI32563809, Length=212, Percent_Identity=29.2452830188679, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17507613, Length=212, Percent_Identity=29.2452830188679, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17568967, Length=219, Percent_Identity=29.6803652968037, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=30.3149606299213, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17558628, Length=193, Percent_Identity=32.1243523316062, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=26.7441860465116, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193203117, Length=211, Percent_Identity=26.0663507109005, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17555612, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193203115, Length=207, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=31.9066147859922, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17558006, Length=206, Percent_Identity=26.6990291262136, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193210355, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=29.8449612403101, Blast_Score=104, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6322861, Length=245, Percent_Identity=26.9387755102041, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=35.0806451612903, Blast_Score=140, Evalue=6e-34, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=34.6613545816733, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=32.5396825396825, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=33.7349397590361, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=32.2448979591837, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=33.1983805668016, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=32.1138211382114, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=30, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI18859837, Length=243, Percent_Identity=31.2757201646091, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24649181, Length=173, Percent_Identity=30.635838150289, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI21357673, Length=200, Percent_Identity=30, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=28.3236994219653, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=30.1980198019802, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI45554248, Length=234, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24640117, Length=234, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=27.843137254902, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28573296, Length=204, Percent_Identity=27.9411764705882, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=25.615763546798, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=27.7456647398844, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 27258; Mature: 27258
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSGKTALVTGSDQGIGQGIALRLAEEGADVVVNYRKNRDGAETTRAQIEKLGRRTASI CCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH QADVGQVADARRLVEESVAALGGLDILVNNAGIEKNASFVDVTEEDYNAVIAVNMSGPFF HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCC STQTFARHRRDVKAGGKVINISSVHEELPFPHFTAYCMAKGGLKMMMRNLSIELAPLGIT CHHHHHHHHHHHHCCCCEEEECHHHHHCCCCHHHHHHHHHCCHHHHHHHCCEEEEEEEEE INNVAPGAIQTPINQKLLSDPKLLEPLLANIPLKRLGQPADVAGVVAFLASQDADYITGT ECCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCCEEECE TIVVDGGLLWNYSEQ EEEEECCEEECCCCC >Mature Secondary Structure MRLSGKTALVTGSDQGIGQGIALRLAEEGADVVVNYRKNRDGAETTRAQIEKLGRRTASI CCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH QADVGQVADARRLVEESVAALGGLDILVNNAGIEKNASFVDVTEEDYNAVIAVNMSGPFF HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCC STQTFARHRRDVKAGGKVINISSVHEELPFPHFTAYCMAKGGLKMMMRNLSIELAPLGIT CHHHHHHHHHHHHCCCCEEEECHHHHHCCCCHHHHHHHHHCCHHHHHHHCCEEEEEEEEE INNVAPGAIQTPINQKLLSDPKLLEPLLANIPLKRLGQPADVAGVVAFLASQDADYITGT ECCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCCEEECE TIVVDGGLLWNYSEQ EEEEECCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA