Click here to switch to the map view.

The map label for this gene is ocd2 [H]

Identifier: 116621420

GI number: 116621420

Start: 2944931

End: 2945887

Strand: Reverse

Name: ocd2 [H]

Synonym: Acid_2302

Alternate gene names: 116621420

Gene position: 2945887-2944931 (Counterclockwise)

Preceding gene: 116621421

Following gene: 116621419

Centisome position: 29.56

GC content: 68.03

Gene sequence:

>957_bases
ATGCCACTTTGGCTCTCGGAATCCGATGTGCGCGCAGCGTTGCCGATGACGGACCTGATCGACGCCATGGAACGCGCGCT
GATCGCCTTTTCCGCCGGACGCGTGGTGCAGCCCGTCCGCACCGTAATGGAATTCCGGCCGGGAGGCTTCTTCGGCCTCA
TGCCCGCGCTCGATCCCGATGGCCTGCTCGGCGCTAAAATCCTCACGGTCCTGCCCGAGAATCTCGAAGCCGGCCTGCCC
TCCCACCAGGCCTCGATCCTCCTCTTCGACCCCACGTCGGGCGCGCTGCTGGCCATCACCGACGGCCGCTACATCACCGA
AGCACGAACTGCCGCCGTGTCCGCCGTCTCCGTGCGTCACCTCGCGCGCCGCGACGCCAAGGTGCTGGCGATCATCGGCT
CGGGCGTGCAGGCCCACAGTCACATGGAAGCCCTCCTCCTGGTCCACGAGTTCGGCGAATTCCGCGCCTGGAGCCCCAAC
GCCGCCCGCCTCGAAAAGTTCACGCAGCATTGGAACATCACTGGCGCCGCCAGCGCCGAGCAGGCGGTACGCGGCGCCGA
CGTCATCGTGCTCGCGACTTCTTCCGCCACTCCCGTCATTGAGGACGAATGGGTCGGCGACGGCGCGCACGTGATCGCGG
TCGGCGCCTGCCGCGCCAACATGCGTGAAGCCGCGCCGCGCCTCGTCGGCCGTTCGCTGGTGGTGGTCGATTCGCGCGCC
GCCGCAATGAAAGAAGCCGGCGACATCCTCCTCGCCATGCAGGAAGGATACTGCGGCGCGGGGCACATTTACGCCGAGTT
GGGCGAGATCGCGGCCGGCAGGAAGCCCGGCCGCCGCGATGCCGCGCAGGTCACGTTCTTCAAGTCCCTCGGCCTCGCGA
TCGAAGACGTGGTATCGGCCGGCCTTGCTTACGGGCGCGCCGTGGAGTGTGAACGCGGAGTGCAGGTGCCGCTGTGA

Upstream 100 bases:

>100_bases
GCTCGCCCCGCGATGTGCCGAGCTTCCGCCACCTTCATGCCCTCTTCAATCGGAGCCGATCGCCTTCTCCATCCCGCGAA
CACGCTAGAATATTTCCGAC

Downstream 100 bases:

>100_bases
AATATGCGTGGTTGTTGGCCGCCACGCTGCTCGTCCTGGCAGTGGTGGCCGCCAAGCCAGGCCGCGAGCCGCTGCCGCCG
CGAGTCACCATTTCTCCGGC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MPLWLSESDVRAALPMTDLIDAMERALIAFSAGRVVQPVRTVMEFRPGGFFGLMPALDPDGLLGAKILTVLPENLEAGLP
SHQASILLFDPTSGALLAITDGRYITEARTAAVSAVSVRHLARRDAKVLAIIGSGVQAHSHMEALLLVHEFGEFRAWSPN
AARLEKFTQHWNITGAASAEQAVRGADVIVLATSSATPVIEDEWVGDGAHVIAVGACRANMREAAPRLVGRSLVVVDSRA
AAMKEAGDILLAMQEGYCGAGHIYAELGEIAAGRKPGRRDAAQVTFFKSLGLAIEDVVSAGLAYGRAVECERGVQVPL

Sequences:

>Translated_318_residues
MPLWLSESDVRAALPMTDLIDAMERALIAFSAGRVVQPVRTVMEFRPGGFFGLMPALDPDGLLGAKILTVLPENLEAGLP
SHQASILLFDPTSGALLAITDGRYITEARTAAVSAVSVRHLARRDAKVLAIIGSGVQAHSHMEALLLVHEFGEFRAWSPN
AARLEKFTQHWNITGAASAEQAVRGADVIVLATSSATPVIEDEWVGDGAHVIAVGACRANMREAAPRLVGRSLVVVDSRA
AAMKEAGDILLAMQEGYCGAGHIYAELGEIAAGRKPGRRDAAQVTFFKSLGLAIEDVVSAGLAYGRAVECERGVQVPL
>Mature_317_residues
PLWLSESDVRAALPMTDLIDAMERALIAFSAGRVVQPVRTVMEFRPGGFFGLMPALDPDGLLGAKILTVLPENLEAGLPS
HQASILLFDPTSGALLAITDGRYITEARTAAVSAVSVRHLARRDAKVLAIIGSGVQAHSHMEALLLVHEFGEFRAWSPNA
ARLEKFTQHWNITGAASAEQAVRGADVIVLATSSATPVIEDEWVGDGAHVIAVGACRANMREAAPRLVGRSLVVVDSRAA
AMKEAGDILLAMQEGYCGAGHIYAELGEIAAGRKPGRRDAAQVTFFKSLGLAIEDVVSAGLAYGRAVECERGVQVPL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=313, Percent_Identity=41.5335463258786, Blast_Score=211, Evalue=9e-55,
Organism=Homo sapiens, GI62241008, Length=274, Percent_Identity=42.3357664233577, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI24642678, Length=349, Percent_Identity=28.080229226361, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 33666; Mature: 33535

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLWLSESDVRAALPMTDLIDAMERALIAFSAGRVVQPVRTVMEFRPGGFFGLMPALDPD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEECCCCCCCC
GLLGAKILTVLPENLEAGLPSHQASILLFDPTSGALLAITDGRYITEARTAAVSAVSVRH
CCHHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCEEEEEECCCEEHHHHHHHHHHHHHHH
LARRDAKVLAIIGSGVQAHSHMEALLLVHEFGEFRAWSPNAARLEKFTQHWNITGAASAE
HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHH
QAVRGADVIVLATSSATPVIEDEWVGDGAHVIAVGACRANMREAAPRLVGRSLVVVDSRA
HHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCEEEEEECHH
AAMKEAGDILLAMQEGYCGAGHIYAELGEIAAGRKPGRRDAAQVTFFKSLGLAIEDVVSA
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHH
GLAYGRAVECERGVQVPL
HHHHCCEEECCCCCCCCC
>Mature Secondary Structure 
PLWLSESDVRAALPMTDLIDAMERALIAFSAGRVVQPVRTVMEFRPGGFFGLMPALDPD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEECCCCCCCC
GLLGAKILTVLPENLEAGLPSHQASILLFDPTSGALLAITDGRYITEARTAAVSAVSVRH
CCHHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCEEEEEECCCEEHHHHHHHHHHHHHHH
LARRDAKVLAIIGSGVQAHSHMEALLLVHEFGEFRAWSPNAARLEKFTQHWNITGAASAE
HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHH
QAVRGADVIVLATSSATPVIEDEWVGDGAHVIAVGACRANMREAAPRLVGRSLVVVDSRA
HHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCEEEEEECHH
AAMKEAGDILLAMQEGYCGAGHIYAELGEIAAGRKPGRRDAAQVTFFKSLGLAIEDVVSA
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHH
GLAYGRAVECERGVQVPL
HHHHCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]