| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is clpB [H]
Identifier: 116621396
GI number: 116621396
Start: 2909775
End: 2912246
Strand: Direct
Name: clpB [H]
Synonym: Acid_2278
Alternate gene names: 116621396
Gene position: 2909775-2912246 (Clockwise)
Preceding gene: 116621395
Following gene: 116621398
Centisome position: 29.2
GC content: 61.77
Gene sequence:
>2472_bases ATGTTTGAGCGTTATACGGAGAAGGCGCGTAGGGTGATCTTCTTCGCGCGGTATGAAGCCAGCCAGTTCGGCAGTCCGTA CATCGAGACCGAACACCTGCTCCTCGGCCTGCTGCGAGAAGATAAGGCGCTGGCAAACCGCTTTCTGCGGTCTCATGCCG CGGTGGAGAGCATCCGAAAACAGATTGAAGGCCATACCACAATCCGGGAAAAGGTCTCCACCAGTGTCGACTTGCCGCTC AGTCACGAGTGCAAGCGCGTCCTGGCCTACGGAGCCGAAGAAGCCGAACGGTTAAGCCACAAGCACATCGGCACCGAGCA CCTGCTGCTCGGGCTGCTGCGCGAAGAGAAGTGTTTCGCCGCGGAGATCCTCCACGAACGCGGCCTGCGCCTTTCCACCA TCCGCGAGGAGCTGGCGCGCTCGCAGAGTGAGAAGGTAGCGTCCGCCCGGCCCAAGGAGAGTTCGCTGCTGGCCGAGTTC AGCCGCGATCTCACCCAGGCCGCGATGGACAACACGCTGGACCCGCTCATCGGGCGTGATTACGAGTTGGAACGGGTAGT CCAGATCCTCTGCCGCCGCACCAAGAACAACCCGGTGTTGATCGGCGAACCCGGCGTGGGCAAAACCGCCATTGTCGAAG GCCTGGCGCAGCGCATTGCCGAAGGCGATGTGCCCTCGTTCCTGGCCGACAAGCGCATCCTGGCGCTCGATCTTTCCCTG ATCGTCGCCGGCACCAAGTACCGGGGCCAGTTCGAAGAGCGCCTCAAGACCATCATGAAGGAGCTGATGGAGAATCAGAA CGCCATCATCTTCATCGACGAGCTGCATACGCTCGTGGGCGCAGGCTCCGCCGAAGGCTCGTTGGACGCCGCCAACATCC TGAAGCCCGCCCTCTCGCGCGGCGAAATCCAGTGCATCGGCGCCACCACCCCTGCCGAATTCCGCAAGTCCATCGAGAAG GATCGTTCGCTCGAGCGCCGCTTCCAGGCCGTCAAGGTGCCTCCGCCAAATGAAAGCGACGCTATCAAGATCCTCTTCGG TATCAAGGACCGCTACGAGAAGTTCCACGCCGTCGCCTATACCGACGACGCCATCGAGGCCGCGGTCTACACCTCCAGCC GCTACATTCCGGACCGCTACCTGCCGGACAAGGCCATCGATCTGATCGATGAAGCCGGCGCGCGCGTCAAACTGCGGCAG ACCACGCTGCCCGCCGACCTCGCCGATATCCAGAAGCGCATCAAGTTCATCGTGCACCGCATGGAGAACGCGATCGCCAA TCACGAGTTCGAAAAGGCGCGCTTTTATAGCGACGAAGAACGCAAGGAGCGCGAGAACATGCGCCTCCTCCGCGAGAAGT ATAACCTGGACGATTCCTCCACCGGCTGCGTCACCAAGGACGACATCGAAGACGTGGTCGCCCGCTGGACCGGCGTTCCG ATGACCTCCATCAAGGAAGAGGAAATTGCCAAGCTGCTGCGCATCGAAGAAGAGTTGCACAAGCGCGTCATCAGCCAGGA GAAAGCCATCTCCGCGCTGGCCCGCGCCATCCGCCGCTCCCGCGCCGGACTGAAGGCGAGCAATCGCCCCGCCGGCAGCT TCTTGTTCCTGGGACCCACCGGCGTCGGCAAAACCGAGGTCGCCCGTGCCCTGGCCGGCTTCCTCTTCGGCAGCGAGAAG AGCCTGGTGCGCTTCGATATGTCGGAGTACATGGAGAAGCACTCGGTCAGCAAGCTGATCGGTTCGCCTCCCGGCTACGT CGGCTACGAAGAGGGCGGCCAGCTCACCGAGCGCGTCAAGCGCAATCCCTATTCGATCATCCTGCTCGACGAAATCGAGA AGGCGCATCCGGATATTTACAACATCCTGCTGCAGGTCTTTGAAGACGGCCAGTTGACCGACGGTCTCGGCAACCAGGTC GATTTCAAGAACACGATCATCATCATGACCAGCAACCTGGGCGCCCGCTTCCTCGAGAAGCGCGGCAACCTGGGCTTCTC GATCCCGGCCGGTGAAGCCGGCTCCACCAAGGTCGAGGATATGGTCCGCAGCGAGGTCAAGAAGGCGTTCAATCCCGAAT TCCTCAACCGCCTCGATGAAGTCATTCTCTTCATGTCGCTGACGGATCCGGACCTGATCCAGATCATGGAACTGCTGGTG CAGCAGGTGAACGTCAACCTGGTGGCCAAGCAGGTCAAGATCCATCTGGCCCCGGACGCCGCCAAGTACATTCTGGAGAA GACCTGCGCCGACCGCAGCTATGGCGCCCGGCCCCTGCGCCGCGCGCTGCAGAAGTACATCGAAGACCCGCTCAGCGAGG CGCTCATCCAGGGCACCCTGCCTCGTCCGGCGGATCTCGAGGTCTACCTCGGCGACACCGGCATCTACTATCGCGTGATG AACGCGGAAGGCGATGCCGAAGTGACGGTCCCGGCCGAACCCCCGGTCGGAACGCTGCTCTACACGTTTTAG
Upstream 100 bases:
>100_bases CTGAACATGGATAAAGGTGGTCTGGTACCGGATGGACCATCTAATTCGCAACCAGAGAGCAACCCGGAGTATCTTTAAGT CATAGGGGGCATCGCTTTTT
Downstream 100 bases:
>100_bases CTTTTCGCAAAAAGAAAAACGGCGGACCGCACTGCGCGGTCCGCCGTTTTTTGTTGCCCCGGTGATCACTTGCCCTGCAG ATTCCTGGCGCACACCCTAA
Product: ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 823; Mature: 823
Protein sequence:
>823_residues MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALANRFLRSHAAVESIRKQIEGHTTIREKVSTSVDLPL SHECKRVLAYGAEEAERLSHKHIGTEHLLLGLLREEKCFAAEILHERGLRLSTIREELARSQSEKVASARPKESSLLAEF SRDLTQAAMDNTLDPLIGRDYELERVVQILCRRTKNNPVLIGEPGVGKTAIVEGLAQRIAEGDVPSFLADKRILALDLSL IVAGTKYRGQFEERLKTIMKELMENQNAIIFIDELHTLVGAGSAEGSLDAANILKPALSRGEIQCIGATTPAEFRKSIEK DRSLERRFQAVKVPPPNESDAIKILFGIKDRYEKFHAVAYTDDAIEAAVYTSSRYIPDRYLPDKAIDLIDEAGARVKLRQ TTLPADLADIQKRIKFIVHRMENAIANHEFEKARFYSDEERKERENMRLLREKYNLDDSSTGCVTKDDIEDVVARWTGVP MTSIKEEEIAKLLRIEEELHKRVISQEKAISALARAIRRSRAGLKASNRPAGSFLFLGPTGVGKTEVARALAGFLFGSEK SLVRFDMSEYMEKHSVSKLIGSPPGYVGYEEGGQLTERVKRNPYSIILLDEIEKAHPDIYNILLQVFEDGQLTDGLGNQV DFKNTIIIMTSNLGARFLEKRGNLGFSIPAGEAGSTKVEDMVRSEVKKAFNPEFLNRLDEVILFMSLTDPDLIQIMELLV QQVNVNLVAKQVKIHLAPDAAKYILEKTCADRSYGARPLRRALQKYIEDPLSEALIQGTLPRPADLEVYLGDTGIYYRVM NAEGDAEVTVPAEPPVGTLLYTF
Sequences:
>Translated_823_residues MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALANRFLRSHAAVESIRKQIEGHTTIREKVSTSVDLPL SHECKRVLAYGAEEAERLSHKHIGTEHLLLGLLREEKCFAAEILHERGLRLSTIREELARSQSEKVASARPKESSLLAEF SRDLTQAAMDNTLDPLIGRDYELERVVQILCRRTKNNPVLIGEPGVGKTAIVEGLAQRIAEGDVPSFLADKRILALDLSL IVAGTKYRGQFEERLKTIMKELMENQNAIIFIDELHTLVGAGSAEGSLDAANILKPALSRGEIQCIGATTPAEFRKSIEK DRSLERRFQAVKVPPPNESDAIKILFGIKDRYEKFHAVAYTDDAIEAAVYTSSRYIPDRYLPDKAIDLIDEAGARVKLRQ TTLPADLADIQKRIKFIVHRMENAIANHEFEKARFYSDEERKERENMRLLREKYNLDDSSTGCVTKDDIEDVVARWTGVP MTSIKEEEIAKLLRIEEELHKRVISQEKAISALARAIRRSRAGLKASNRPAGSFLFLGPTGVGKTEVARALAGFLFGSEK SLVRFDMSEYMEKHSVSKLIGSPPGYVGYEEGGQLTERVKRNPYSIILLDEIEKAHPDIYNILLQVFEDGQLTDGLGNQV DFKNTIIIMTSNLGARFLEKRGNLGFSIPAGEAGSTKVEDMVRSEVKKAFNPEFLNRLDEVILFMSLTDPDLIQIMELLV QQVNVNLVAKQVKIHLAPDAAKYILEKTCADRSYGARPLRRALQKYIEDPLSEALIQGTLPRPADLEVYLGDTGIYYRVM NAEGDAEVTVPAEPPVGTLLYTF >Mature_823_residues MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALANRFLRSHAAVESIRKQIEGHTTIREKVSTSVDLPL SHECKRVLAYGAEEAERLSHKHIGTEHLLLGLLREEKCFAAEILHERGLRLSTIREELARSQSEKVASARPKESSLLAEF SRDLTQAAMDNTLDPLIGRDYELERVVQILCRRTKNNPVLIGEPGVGKTAIVEGLAQRIAEGDVPSFLADKRILALDLSL IVAGTKYRGQFEERLKTIMKELMENQNAIIFIDELHTLVGAGSAEGSLDAANILKPALSRGEIQCIGATTPAEFRKSIEK DRSLERRFQAVKVPPPNESDAIKILFGIKDRYEKFHAVAYTDDAIEAAVYTSSRYIPDRYLPDKAIDLIDEAGARVKLRQ TTLPADLADIQKRIKFIVHRMENAIANHEFEKARFYSDEERKERENMRLLREKYNLDDSSTGCVTKDDIEDVVARWTGVP MTSIKEEEIAKLLRIEEELHKRVISQEKAISALARAIRRSRAGLKASNRPAGSFLFLGPTGVGKTEVARALAGFLFGSEK SLVRFDMSEYMEKHSVSKLIGSPPGYVGYEEGGQLTERVKRNPYSIILLDEIEKAHPDIYNILLQVFEDGQLTDGLGNQV DFKNTIIIMTSNLGARFLEKRGNLGFSIPAGEAGSTKVEDMVRSEVKKAFNPEFLNRLDEVILFMSLTDPDLIQIMELLV QQVNVNLVAKQVKIHLAPDAAKYILEKTCADRSYGARPLRRALQKYIEDPLSEALIQGTLPRPADLEVYLGDTGIYYRVM NAEGDAEVTVPAEPPVGTLLYTF
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=363, Percent_Identity=33.6088154269972, Blast_Score=194, Evalue=2e-49, Organism=Escherichia coli, GI1787109, Length=800, Percent_Identity=39.25, Blast_Score=518, Evalue=1e-148, Organism=Escherichia coli, GI1788943, Length=338, Percent_Identity=51.7751479289941, Blast_Score=356, Evalue=3e-99, Organism=Saccharomyces cerevisiae, GI6320464, Length=707, Percent_Identity=42.5742574257426, Blast_Score=546, Evalue=1e-156, Organism=Saccharomyces cerevisiae, GI6323002, Length=871, Percent_Identity=32.1469575200919, Blast_Score=434, Evalue=1e-122,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 - InterPro: IPR001943 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 92490; Mature: 92490
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00018 EF_HAND_1 ; PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALANRFLRSHAAVESIRK CCCHHHHHHHHEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIEGHTTIREKVSTSVDLPLSHECKRVLAYGAEEAERLSHKHIGTEHLLLGLLREEKCFA HHCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AEILHERGLRLSTIREELARSQSEKVASARPKESSLLAEFSRDLTQAAMDNTLDPLIGRD HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCC YELERVVQILCRRTKNNPVLIGEPGVGKTAIVEGLAQRIAEGDVPSFLADKRILALDLSL CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEHEEEHHH IVAGTKYRGQFEERLKTIMKELMENQNAIIFIDELHTLVGAGSAEGSLDAANILKPALSR HEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHCC GEIQCIGATTPAEFRKSIEKDRSLERRFQAVKVPPPNESDAIKILFGIKDRYEKFHAVAY CCEEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCHHHHHHHHHEEE TDDAIEAAVYTSSRYIPDRYLPDKAIDLIDEAGARVKLRQTTLPADLADIQKRIKFIVHR CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHH MENAIANHEFEKARFYSDEERKERENMRLLREKYNLDDSSTGCVTKDDIEDVVARWTGVP HHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC MTSIKEEEIAKLLRIEEELHKRVISQEKAISALARAIRRSRAGLKASNRPAGSFLFLGPT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC GVGKTEVARALAGFLFGSEKSLVRFDMSEYMEKHSVSKLIGSPPGYVGYEEGGQLTERVK CCCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH RNPYSIILLDEIEKAHPDIYNILLQVFEDGQLTDGLGNQVDFKNTIIIMTSNLGARFLEK CCCCEEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH RGNLGFSIPAGEAGSTKVEDMVRSEVKKAFNPEFLNRLDEVILFMSLTDPDLIQIMELLV CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCHHHHHHHHHH QQVNVNLVAKQVKIHLAPDAAKYILEKTCADRSYGARPLRRALQKYIEDPLSEALIQGTL HHHCHHEEEEEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCC PRPADLEVYLGDTGIYYRVMNAEGDAEVTVPAEPPVGTLLYTF CCCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCEEECC >Mature Secondary Structure MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALANRFLRSHAAVESIRK CCCHHHHHHHHEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QIEGHTTIREKVSTSVDLPLSHECKRVLAYGAEEAERLSHKHIGTEHLLLGLLREEKCFA HHCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AEILHERGLRLSTIREELARSQSEKVASARPKESSLLAEFSRDLTQAAMDNTLDPLIGRD HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCC YELERVVQILCRRTKNNPVLIGEPGVGKTAIVEGLAQRIAEGDVPSFLADKRILALDLSL CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEHEEEHHH IVAGTKYRGQFEERLKTIMKELMENQNAIIFIDELHTLVGAGSAEGSLDAANILKPALSR HEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHCC GEIQCIGATTPAEFRKSIEKDRSLERRFQAVKVPPPNESDAIKILFGIKDRYEKFHAVAY CCEEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCHHHHHHHHHEEE TDDAIEAAVYTSSRYIPDRYLPDKAIDLIDEAGARVKLRQTTLPADLADIQKRIKFIVHR CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHH MENAIANHEFEKARFYSDEERKERENMRLLREKYNLDDSSTGCVTKDDIEDVVARWTGVP HHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC MTSIKEEEIAKLLRIEEELHKRVISQEKAISALARAIRRSRAGLKASNRPAGSFLFLGPT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC GVGKTEVARALAGFLFGSEKSLVRFDMSEYMEKHSVSKLIGSPPGYVGYEEGGQLTERVK CCCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH RNPYSIILLDEIEKAHPDIYNILLQVFEDGQLTDGLGNQVDFKNTIIIMTSNLGARFLEK CCCCEEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH RGNLGFSIPAGEAGSTKVEDMVRSEVKKAFNPEFLNRLDEVILFMSLTDPDLIQIMELLV CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCHHHHHHHHHH QQVNVNLVAKQVKIHLAPDAAKYILEKTCADRSYGARPLRRALQKYIEDPLSEALIQGTL HHHCHHEEEEEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCC PRPADLEVYLGDTGIYYRVMNAEGDAEVTVPAEPPVGTLLYTF CCCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12235376 [H]