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The map label for this gene is codB [C]

Identifier: 116621285

GI number: 116621285

Start: 2772135

End: 2773478

Strand: Reverse

Name: codB [C]

Synonym: Acid_2166

Alternate gene names: 116621285

Gene position: 2773478-2772135 (Counterclockwise)

Preceding gene: 116621289

Following gene: 116621282

Centisome position: 27.83

GC content: 65.03

Gene sequence:

>1344_bases
ATGTTGCCAGACTATCTAGCAAAAGCCGTGCCCAACCCCGCCGCTAACCGGGCCCCCTGGTACGCCAATACCGCCCCGAC
CTACGCGGGAATTTTTCTCTGGATCGCCTTCTACCAGCAGATGGCCGGAGGCACGCTGCAACACGCCGGACTGGGCGTCT
GCCTGGCGGCGCTGCTGGTAGCGGGGCTGCTCAGCTATGCGCTCTACTATCGCGTGCCGGCGATGCTCGGCATGAAGACC
GGGTTCCCGCTCTACGTAGTGGGGAGCTCGACATTCGGCACGGCGGGCGGCTACATCATGCCGGGCCTGCTGATGGGCGT
GCTGCAGATCGGCTGGTTCGCGGTGGGCACATTCTTCTCGGCGGACTACATTCTTCGCGGGCTGGGGATGGCCAGCAAGC
CGGGGACGCTGCCGTTCGCGGTGGCGTGTATTCTGTGGGGCGGCACGATGGCATTCGCGGGCGCGAAGGGCGTGCAGTAC
GTCTCGAAAATCGCGCTCTTCCTGAATGCGATTCCGCTGTTGATGCTGCTGGTGGTGTTCTTCCAGACCTCGGGCGGGAT
CGGCAACTACCAGGTTCCGGCGGCGCAGGCTAACAACTTCGGCGCGTTCACCACGATGATCGCGATCGTGATCGGGTTCT
TCGCGACGGCGGGCGCCGCGGGAGCCGATTTCGGCATGAATGCGCGCGACGAGCGCGACGTGCGCTGGGGCGGCCTGGTG
GGGATCACGCTGGCCGTGATGGTGGCCGGCGGATTGCCCCTGCTCGCAGTGGCGGGCGCGCACGGCAGCGGGCTTTCGCA
GAGCTGGGATTTCGGCGAAGTGGTGCAGGCCATCGGCGGACCGATCGCTTCGGCGATGCTGTTCCTGTTCGCGATCGCCT
CGATTCCGGCATCGTGCTTCTGCGCGTTCATTGCGGGGAACAGCTTCTCCACGATGGTGCCGGGAGTACCGCGCGTTTCG
AGCACGATGGCGGCGGCGGCGGTGGGCGTGGTGCTGGCAATCACCGGCGTGGCGGCGAACCTGATCGGGTTCTTCACGAT
CGTGGGTGCGTCGTTCGGGCCGATCATCGGCGCGATGGTGGCGGATTATTTGTTGTCGGGGAAGCGGTGGAGCGGTCCGC
GCGAGGGCGTGAATTTGGCCGGGTACATTGCGTGGGCGATTGGGTTCATTGTGGGAATTCTGCCGCTCGACGTGCTGCCG
ATCACGCTGTCGCCGGAGACCAAGAGCTATGTGCAGCCGGCGGTGGTCTACAGCTTCATCGTGGGCTTTGTGGTCTACTA
TGCGCTGGCAAAGGCGGGCATGCAATCGAAGACCGTCTCGATGCCGAAGGCCGTGTCGGCGTAG

Upstream 100 bases:

>100_bases
ATGAATTGGATTGTATCAATTTCGTCGGGACGAAGTTGTGAACTGCCGTGTAGTATACTGACCGCTTCGATCATCATTCG
TAAACCGAAGAGGAACTGCC

Downstream 100 bases:

>100_bases
GTGTGAGAGCGGGAGCGCCGAAGAAGCCGCCTGAAGGGCGGCTGCAGGCAGGATTGCCTGCCCCACAGTGCGGCGAGCCG
CAAATTGAAATCGTGGTTTA

Product: cytosine/purines, uracil, thiamine, allantoin permease

Products: Proton [Cytoplasm]; cytosine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MLPDYLAKAVPNPAANRAPWYANTAPTYAGIFLWIAFYQQMAGGTLQHAGLGVCLAALLVAGLLSYALYYRVPAMLGMKT
GFPLYVVGSSTFGTAGGYIMPGLLMGVLQIGWFAVGTFFSADYILRGLGMASKPGTLPFAVACILWGGTMAFAGAKGVQY
VSKIALFLNAIPLLMLLVVFFQTSGGIGNYQVPAAQANNFGAFTTMIAIVIGFFATAGAAGADFGMNARDERDVRWGGLV
GITLAVMVAGGLPLLAVAGAHGSGLSQSWDFGEVVQAIGGPIASAMLFLFAIASIPASCFCAFIAGNSFSTMVPGVPRVS
STMAAAAVGVVLAITGVAANLIGFFTIVGASFGPIIGAMVADYLLSGKRWSGPREGVNLAGYIAWAIGFIVGILPLDVLP
ITLSPETKSYVQPAVVYSFIVGFVVYYALAKAGMQSKTVSMPKAVSA

Sequences:

>Translated_447_residues
MLPDYLAKAVPNPAANRAPWYANTAPTYAGIFLWIAFYQQMAGGTLQHAGLGVCLAALLVAGLLSYALYYRVPAMLGMKT
GFPLYVVGSSTFGTAGGYIMPGLLMGVLQIGWFAVGTFFSADYILRGLGMASKPGTLPFAVACILWGGTMAFAGAKGVQY
VSKIALFLNAIPLLMLLVVFFQTSGGIGNYQVPAAQANNFGAFTTMIAIVIGFFATAGAAGADFGMNARDERDVRWGGLV
GITLAVMVAGGLPLLAVAGAHGSGLSQSWDFGEVVQAIGGPIASAMLFLFAIASIPASCFCAFIAGNSFSTMVPGVPRVS
STMAAAAVGVVLAITGVAANLIGFFTIVGASFGPIIGAMVADYLLSGKRWSGPREGVNLAGYIAWAIGFIVGILPLDVLP
ITLSPETKSYVQPAVVYSFIVGFVVYYALAKAGMQSKTVSMPKAVSA
>Mature_447_residues
MLPDYLAKAVPNPAANRAPWYANTAPTYAGIFLWIAFYQQMAGGTLQHAGLGVCLAALLVAGLLSYALYYRVPAMLGMKT
GFPLYVVGSSTFGTAGGYIMPGLLMGVLQIGWFAVGTFFSADYILRGLGMASKPGTLPFAVACILWGGTMAFAGAKGVQY
VSKIALFLNAIPLLMLLVVFFQTSGGIGNYQVPAAQANNFGAFTTMIAIVIGFFATAGAAGADFGMNARDERDVRWGGLV
GITLAVMVAGGLPLLAVAGAHGSGLSQSWDFGEVVQAIGGPIASAMLFLFAIASIPASCFCAFIAGNSFSTMVPGVPRVS
STMAAAAVGVVLAITGVAANLIGFFTIVGASFGPIIGAMVADYLLSGKRWSGPREGVNLAGYIAWAIGFIVGILPLDVLP
ITLSPETKSYVQPAVVYSFIVGFVVYYALAKAGMQSKTVSMPKAVSA

Specific function: Required For Cytosine Transport Into The Cell. [C]

COG id: COG1457

COG function: function code F; Purine-cytosine permease and related proteins

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46106; Mature: 46106

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCHHCCCCHHCCC
>Mature Secondary Structure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HHHHHHHHHHHCCCCCHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; cytosine [Periplasm] [C]

Specific reaction: Proton [Periplasm] + cytosine [Periplasm] = Proton [Cytoplasm] + cytosine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA