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The map label for this gene is araR [H]

Identifier: 116621187

GI number: 116621187

Start: 2629249

End: 2630367

Strand: Direct

Name: araR [H]

Synonym: Acid_2068

Alternate gene names: 116621187

Gene position: 2629249-2630367 (Clockwise)

Preceding gene: 116621179

Following gene: 116621188

Centisome position: 26.38

GC content: 58.45

Gene sequence:

>1119_bases
GTGATTACTGACAGGAAGCTCCCAAAACACGAAGCGATCCGCCAACAGCTGACCGATGCGATCACGGGCGGGACATTCCA
GCAAGGGCAGCGTCTCCCGAGCGAAGCTGAGCTGGTTAAAAGCTTTAACGCCTCTCGGCCGACCGTGATTCGGGCCCTGC
GGGAGCTTCAGCATCTGGGCATGATCGAACGACGCGCCGGTTCAGGCAGCTACGTCAAAGCGGATCATACCAGCCGTGGG
CACACGTTCGGTTTGCTCATACCGGAACTAGGGCAGACTGAGATATTCGAGCCCATTTGCCGGGGAATGGCCGAGGCCCA
GCAGGGCGAGCAGCACGTCCTGCTGTGGGGAAGCTCATTAGGGGATTCGGTGAAAACCGAGAATCAGGTCGCCAACTTAT
GCCGGCAATTCGTCAACAAGCGAGTCTCCGGTCTGTTTTTTGCGCCTCTCGAACTGACGCCGCAGAAGGATGTCATCAAC
CGTAGCATTGCGGAAGTGTTCGACCGGGAAGGCATACCGATTATTCTGCTGGATCGCGACCTGGTTTCCTATCCGGTTCG
CAGCCAATACGACCTGGTCGGCATAGACAATCGCAGGGCCGGATATACGATCACTTCCCATTTGCTTGGTGCTGGATGCA
GACGCGTTCTGTTCCTTGGCCGTCCCAGTTCGGCGCCCACGGTGGATGCGCGGATCGCCGGATACCGCGAAGCCATGGCC
AACGCGGGAATCGAAATCGAGCCTGGATACGTCTGCCGCATCGATCCGCAAGACAAGGCCGGCGTGCAGGAGATTCTTGA
GCGTCTCAGGCCCGACGGATTCGTTTGCGCCAACGACTTCACGGCCGCCCATCTATTGAAGTCGCTGGACGAGTTGAACG
TCAAAGTCCCTGAGCATATTTGTATGGCCGGGATCGACGACGTGAAATACGCCAGCCTTCTATCGGTTCCGCTCACGACC
ATCCACCAGCCATGCGACGACATGGGCTCGACCGCGATCACCGCGATGATGGAGCGGGTTCGGAGACCTCTCCTGCCGGC
CAGAGATATCCTGCTGAATTTTCGGCTGGTGGTTCGGGAATCCTGCGGTGCCCGCAAAAAAGGCCTGAACCCGGACTAA

Upstream 100 bases:

>100_bases
CCCTGAAATTCGCCCTGCGTTGAACTATAACGCCGCTGTAAACAGAGTGTCAAGCGGAATTTGCTAGCAAATCTAGCTTA
GAATCTGTATTATCAATTCT

Downstream 100 bases:

>100_bases
GTGCATGACACCAGGAAATCCGACTTTACAGCATGAAGCATCGGCGCAGAGTAATCCTATACGGATTGTAGTGCTCGGGG
AGGTTCTGTGGGACGTGTTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MITDRKLPKHEAIRQQLTDAITGGTFQQGQRLPSEAELVKSFNASRPTVIRALRELQHLGMIERRAGSGSYVKADHTSRG
HTFGLLIPELGQTEIFEPICRGMAEAQQGEQHVLLWGSSLGDSVKTENQVANLCRQFVNKRVSGLFFAPLELTPQKDVIN
RSIAEVFDREGIPIILLDRDLVSYPVRSQYDLVGIDNRRAGYTITSHLLGAGCRRVLFLGRPSSAPTVDARIAGYREAMA
NAGIEIEPGYVCRIDPQDKAGVQEILERLRPDGFVCANDFTAAHLLKSLDELNVKVPEHICMAGIDDVKYASLLSVPLTT
IHQPCDDMGSTAITAMMERVRRPLLPARDILLNFRLVVRESCGARKKGLNPD

Sequences:

>Translated_372_residues
MITDRKLPKHEAIRQQLTDAITGGTFQQGQRLPSEAELVKSFNASRPTVIRALRELQHLGMIERRAGSGSYVKADHTSRG
HTFGLLIPELGQTEIFEPICRGMAEAQQGEQHVLLWGSSLGDSVKTENQVANLCRQFVNKRVSGLFFAPLELTPQKDVIN
RSIAEVFDREGIPIILLDRDLVSYPVRSQYDLVGIDNRRAGYTITSHLLGAGCRRVLFLGRPSSAPTVDARIAGYREAMA
NAGIEIEPGYVCRIDPQDKAGVQEILERLRPDGFVCANDFTAAHLLKSLDELNVKVPEHICMAGIDDVKYASLLSVPLTT
IHQPCDDMGSTAITAMMERVRRPLLPARDILLNFRLVVRESCGARKKGLNPD
>Mature_372_residues
MITDRKLPKHEAIRQQLTDAITGGTFQQGQRLPSEAELVKSFNASRPTVIRALRELQHLGMIERRAGSGSYVKADHTSRG
HTFGLLIPELGQTEIFEPICRGMAEAQQGEQHVLLWGSSLGDSVKTENQVANLCRQFVNKRVSGLFFAPLELTPQKDVIN
RSIAEVFDREGIPIILLDRDLVSYPVRSQYDLVGIDNRRAGYTITSHLLGAGCRRVLFLGRPSSAPTVDARIAGYREAMA
NAGIEIEPGYVCRIDPQDKAGVQEILERLRPDGFVCANDFTAAHLLKSLDELNVKVPEHICMAGIDDVKYASLLSVPLTT
IHQPCDDMGSTAITAMMERVRRPLLPARDILLNFRLVVRESCGARKKGLNPD

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=290, Percent_Identity=26.8965517241379, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787948, Length=324, Percent_Identity=25.9259259259259, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790369, Length=329, Percent_Identity=24.0121580547112, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789068, Length=170, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789202, Length=295, Percent_Identity=23.728813559322, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787906, Length=317, Percent_Identity=23.9747634069401, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 41189; Mature: 41189

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDRKLPKHEAIRQQLTDAITGGTFQQGQRLPSEAELVKSFNASRPTVIRALRELQHLG
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCC
MIERRAGSGSYVKADHTSRGHTFGLLIPELGQTEIFEPICRGMAEAQQGEQHVLLWGSSL
HHHHCCCCCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
GDSVKTENQVANLCRQFVNKRVSGLFFAPLELTPQKDVINRSIAEVFDREGIPIILLDRD
CCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCH
LVSYPVRSQYDLVGIDNRRAGYTITSHLLGAGCRRVLFLGRPSSAPTVDARIAGYREAMA
HHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHH
NAGIEIEPGYVCRIDPQDKAGVQEILERLRPDGFVCANDFTAAHLLKSLDELNVKVPEHI
HCCCEECCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCHHH
CMAGIDDVKYASLLSVPLTTIHQPCDDMGSTAITAMMERVRRPLLPARDILLNFRLVVRE
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SCGARKKGLNPD
HCCCCCCCCCCC
>Mature Secondary Structure
MITDRKLPKHEAIRQQLTDAITGGTFQQGQRLPSEAELVKSFNASRPTVIRALRELQHLG
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCC
MIERRAGSGSYVKADHTSRGHTFGLLIPELGQTEIFEPICRGMAEAQQGEQHVLLWGSSL
HHHHCCCCCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
GDSVKTENQVANLCRQFVNKRVSGLFFAPLELTPQKDVINRSIAEVFDREGIPIILLDRD
CCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCH
LVSYPVRSQYDLVGIDNRRAGYTITSHLLGAGCRRVLFLGRPSSAPTVDARIAGYREAMA
HHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHH
NAGIEIEPGYVCRIDPQDKAGVQEILERLRPDGFVCANDFTAAHLLKSLDELNVKVPEHI
HCCCEECCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCHHH
CMAGIDDVKYASLLSVPLTTIHQPCDDMGSTAITAMMERVRRPLLPARDILLNFRLVVRE
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SCGARKKGLNPD
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA