BacMap

Definition	Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession	NC_008536
Length	9,965,640

Click here to switch to the map view.

The map label for this gene is yxnA [H]

Identifier: 116621179

GI number: 116621179

Start: 2617020

End: 2618024

Strand: Direct

Name: yxnA [H]

Synonym: Acid_2060

Alternate gene names: 116621179

Gene position: 2617020-2618024 (Clockwise)

Preceding gene: 116621178

Following gene: 116621187

Centisome position: 26.26

GC content: 61.0

Gene sequence:

>1005_bases
ATGCGGAAACAATCACGAGTAGTCGTGGTCACAGGAGCCTCAGCGGGGGTAGGGCGCGCGACAGTCCGTGCCTTTGCCGG
CGAGGGCGCCCATGTAGGCCTGATTGCCCGAGATACCGAAGGCCTTCATGCCGCTGCGCGCGAGGTTGAACGGTCAGGCG
GCAAGGGTTTGGCAGTACCGGCTGATGTAGCCGATGCCGACCAGGTCGAAAAGGCAGCAGGCCGGATCGAAAGCGAACTC
GGCCCGATCGACGTTTGGGTAAATAACGCGATGACGACTGTCTTCGGGCGCGTCGTTGACGTTACACCAGCCGAGTTCAA
ACGTGCCACCGAAGTAACCTATCTCGGCGCCGTTTACGGGACCATGGCCGCTCTCCGCCGCATGTTGCCGCGGAATGAGG
GGAGAATCATCCAGGTAGGATCGGCGCTTGCCTACCGATCGATTCCTCTGCAAGCGGCCTATTGCGGCGCAAAACACGCC
ATCGCCGGCTTCACCGATTCGCTCCGCACCGAGCTGATTCACGACGGCAAGAATATTCACCTGACGATGGTGCAGCTTCC
GGCGATGAACACGCCGCAGTTCACCTGGTGCCGCTCTAAAATGCCCAACCATCCTCAGCCAGTGCCGCCGATCTTCCAGC
CTGAAGTGGCCGCCGAGAGAATTGTCTGGGCCTCTCACCACAGGCGTCGTGAAGTTTTCGTCGGCTTCCCAACCGTGATC
GCCATCGAAGCTAACAAGATCGCTCCGGCTCTTGCCGACCACTATCTTGGCCGCACCGGTTTTGATTCACAGCAGACACG
GGAACCCGTCCCGAAGGATCGAGCGGACAATCTATTCGAAGCCCTGCCCGGCGATTTCGGCGCTCATGGCGTCTTCGGGC
AGCGAGCACGCAACGAAGCCGCGACGACATGGCTTGCGCAACACAAAGGAACAACCGCCCTGGCCGGCGCTGCCTTGGGC
ATTCTCGCTTTCGCACTCAAGAAGCGGGCGTCGCAAGGCGGCTGA

Upstream 100 bases:

>100_bases
AAATGAACCGGCGGCCGCAGAACAGCAAGGAGTCGCAAACATCGGAATGGCCCACTTTCGTGGGCAACGCAGTGCATTCG
GAGGACCAGGGTGTGAGGAA

Downstream 100 bases:

>100_bases
GCAACGCAAGATGAGTCCGGTCGCCGGGCTATGAATGCGGCCGCGAGTTCGGAGTCCTTTTTCCTGGTGCGCGGCCCGCG
AGAAGTCGTTCAACCGCTGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MRKQSRVVVVTGASAGVGRATVRAFAGEGAHVGLIARDTEGLHAAAREVERSGGKGLAVPADVADADQVEKAAGRIESEL
GPIDVWVNNAMTTVFGRVVDVTPAEFKRATEVTYLGAVYGTMAALRRMLPRNEGRIIQVGSALAYRSIPLQAAYCGAKHA
IAGFTDSLRTELIHDGKNIHLTMVQLPAMNTPQFTWCRSKMPNHPQPVPPIFQPEVAAERIVWASHHRRREVFVGFPTVI
AIEANKIAPALADHYLGRTGFDSQQTREPVPKDRADNLFEALPGDFGAHGVFGQRARNEAATTWLAQHKGTTALAGAALG
ILAFALKKRASQGG

Sequences:

>Translated_334_residues
MRKQSRVVVVTGASAGVGRATVRAFAGEGAHVGLIARDTEGLHAAAREVERSGGKGLAVPADVADADQVEKAAGRIESEL
GPIDVWVNNAMTTVFGRVVDVTPAEFKRATEVTYLGAVYGTMAALRRMLPRNEGRIIQVGSALAYRSIPLQAAYCGAKHA
IAGFTDSLRTELIHDGKNIHLTMVQLPAMNTPQFTWCRSKMPNHPQPVPPIFQPEVAAERIVWASHHRRREVFVGFPTVI
AIEANKIAPALADHYLGRTGFDSQQTREPVPKDRADNLFEALPGDFGAHGVFGQRARNEAATTWLAQHKGTTALAGAALG
ILAFALKKRASQGG
>Mature_334_residues
MRKQSRVVVVTGASAGVGRATVRAFAGEGAHVGLIARDTEGLHAAAREVERSGGKGLAVPADVADADQVEKAAGRIESEL
GPIDVWVNNAMTTVFGRVVDVTPAEFKRATEVTYLGAVYGTMAALRRMLPRNEGRIIQVGSALAYRSIPLQAAYCGAKHA
IAGFTDSLRTELIHDGKNIHLTMVQLPAMNTPQFTWCRSKMPNHPQPVPPIFQPEVAAERIVWASHHRRREVFVGFPTVI
AIEANKIAPALADHYLGRTGFDSQQTREPVPKDRADNLFEALPGDFGAHGVFGQRARNEAATTWLAQHKGTTALAGAALG
ILAFALKKRASQGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=223, Percent_Identity=30.9417040358744, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI7706318, Length=170, Percent_Identity=34.7058823529412, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI20149619, Length=172, Percent_Identity=34.8837209302326, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI210032110, Length=252, Percent_Identity=26.1904761904762, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI142976729, Length=237, Percent_Identity=26.1603375527426, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI40807363, Length=231, Percent_Identity=23.8095238095238, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI40254992, Length=167, Percent_Identity=31.1377245508982, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI32455239, Length=234, Percent_Identity=29.4871794871795, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI5031765, Length=234, Percent_Identity=29.4871794871795, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI157739938, Length=175, Percent_Identity=30.2857142857143, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7705925, Length=169, Percent_Identity=31.3609467455621, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI31542939, Length=183, Percent_Identity=29.5081967213115, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=29.6511627906977, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI109715829, Length=232, Percent_Identity=26.7241379310345, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI31543615, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI4504505, Length=243, Percent_Identity=30.8641975308642, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI210032112, Length=252, Percent_Identity=24.2063492063492, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI310128830, Length=228, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI310115468, Length=228, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=209, Percent_Identity=28.2296650717703, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787335, Length=182, Percent_Identity=31.8681318681319, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786701, Length=215, Percent_Identity=27.906976744186, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082100, Length=205, Percent_Identity=30.2439024390244, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082160, Length=169, Percent_Identity=26.0355029585799, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=240, Percent_Identity=29.1666666666667, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI193203117, Length=238, Percent_Identity=28.1512605042017, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71997402, Length=192, Percent_Identity=31.7708333333333, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17567345, Length=169, Percent_Identity=27.2189349112426, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17570069, Length=192, Percent_Identity=30.2083333333333, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=228, Percent_Identity=25.8771929824561, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=220, Percent_Identity=25.4545454545455, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=252, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=187, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=181, Percent_Identity=28.7292817679558, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=251, Percent_Identity=26.6932270916335, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=32.1608040201005, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=31.0526315789474, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24640492, Length=228, Percent_Identity=25.8771929824561, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24649181, Length=223, Percent_Identity=26.0089686098655, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571387, Length=191, Percent_Identity=30.8900523560209, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21356301, Length=226, Percent_Identity=29.2035398230088, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581726, Length=239, Percent_Identity=25.9414225941423, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21355631, Length=247, Percent_Identity=24.6963562753036, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281364892, Length=255, Percent_Identity=25.8823529411765, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357041, Length=178, Percent_Identity=28.6516853932584, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI23397609, Length=181, Percent_Identity=30.3867403314917, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644339, Length=181, Percent_Identity=29.8342541436464, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281364494, Length=205, Percent_Identity=30.7317073170732, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI116007236, Length=175, Percent_Identity=28, Blast_Score=68, Evalue=9e-12,
Organism=Drosophila melanogaster, GI116007238, Length=175, Percent_Identity=28, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571526, Length=170, Percent_Identity=28.8235294117647, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221510726, Length=214, Percent_Identity=25.2336448598131, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24648693, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21355889, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24580925, Length=181, Percent_Identity=28.1767955801105, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35806; Mature: 35806

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQSRVVVVTGASAGVGRATVRAFAGEGAHVGLIARDTEGLHAAAREVERSGGKGLAVP
CCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCC
ADVADADQVEKAAGRIESELGPIDVWVNNAMTTVFGRVVDVTPAEFKRATEVTYLGAVYG
CCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TMAALRRMLPRNEGRIIQVGSALAYRSIPLQAAYCGAKHAIAGFTDSLRTELIHDGKNIH
HHHHHHHHCCCCCCCEEEECCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCEE
LTMVQLPAMNTPQFTWCRSKMPNHPQPVPPIFQPEVAAERIVWASHHRRREVFVGFPTVI
EEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCEEE
AIEANKIAPALADHYLGRTGFDSQQTREPVPKDRADNLFEALPGDFGAHGVFGQRARNEA
EEECCHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
ATTWLAQHKGTTALAGAALGILAFALKKRASQGG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRKQSRVVVVTGASAGVGRATVRAFAGEGAHVGLIARDTEGLHAAAREVERSGGKGLAVP
CCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCC
ADVADADQVEKAAGRIESELGPIDVWVNNAMTTVFGRVVDVTPAEFKRATEVTYLGAVYG
CCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TMAALRRMLPRNEGRIIQVGSALAYRSIPLQAAYCGAKHAIAGFTDSLRTELIHDGKNIH
HHHHHHHHCCCCCCCEEEECCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCEE
LTMVQLPAMNTPQFTWCRSKMPNHPQPVPPIFQPEVAAERIVWASHHRRREVFVGFPTVI
EEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCEEE
AIEANKIAPALADHYLGRTGFDSQQTREPVPKDRADNLFEALPGDFGAHGVFGQRARNEA
EEECCHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
ATTWLAQHKGTTALAGAALGILAFALKKRASQGG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]