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The map label for this gene is yggS [C]

Identifier: 116621130

GI number: 116621130

Start: 2545122

End: 2545787

Strand: Direct

Name: yggS [C]

Synonym: Acid_2011

Alternate gene names: 116621130

Gene position: 2545122-2545787 (Clockwise)

Preceding gene: 116621119

Following gene: 116621131

Centisome position: 25.54

GC content: 65.92

Gene sequence:

>666_bases
ATGGAAGGACTTACGGAAAGACTGACCGCTGTCCGCCTCCGCATCGAGCGCGCCGCCGAGCACGCCCGCCGCAATCCGGC
GGAAATTCTCCTGCTGGCCGTCACCAAGATCTTCCCCGCCTCCGCCATCCGCGAGGCCTACGATCTGGGACTTCGTGACT
TCGGCGAAAACTACGTCCAGGAATTCGAGGGCAAGGCCCCCGAAGTCGCCGGCCTGCCCGGCGCGCGCTTCCACCTGATC
GGCCACCTGCAATCCAACAAATCGTCCAAGGCCGCCGAACTCTTCCATTCCATTCAGACCGTGGACTCCGCCAAACTCGC
ACGCCGCCTCAACGAAAGCGGCCGCCCCCTCGACGTCATGATCGAAGTCAAACTCTCCGGCGAGGATGCCAAGAGCGGCG
TCGATCCCGCCCAGCTCCCCGACCTCATCCAGGCCACCCGCGCCTGCCCCAACCTGAACCTCCGCGGCCTCATGACCATG
CCGCCGTGGAGCGAAGATCCCGAAGCGCCGCGCGCCATCTTCCGCACCTTGCGCGAACTTGCCGCCGAGCACGGTCTGCC
GGGCCTTTCCATGGGAATGTCCAACGACCTGGAGACCGCCATCGAGGAAGGCTCCACCTGCGTGCGCGTCGGCACCGCCC
TCTTCGGACGCCGGAACAAGCCGTGA

Upstream 100 bases:

>100_bases
AGCGGCTGGATATGACAATCCGTTGAATTCTCGAGACAATTTAACTCGACCCTGAGCGCCTGAAAGGGCCATTCCGCCCA
TGCCATACTGAAACCTGAAA

Downstream 100 bases:

>100_bases
ACAAAGAGGCAACGAACTCCCGCCCTTCCCCGTCGCCCCAATCAGAGCCGCGACCGTCAGAGAGCGATCTCGCACCCCAC
GTGAACCCCCGCGTCGGCTT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MEGLTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQEFEGKAPEVAGLPGARFHLI
GHLQSNKSSKAAELFHSIQTVDSAKLARRLNESGRPLDVMIEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTM
PPWSEDPEAPRAIFRTLRELAAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRRNKP

Sequences:

>Translated_221_residues
MEGLTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQEFEGKAPEVAGLPGARFHLI
GHLQSNKSSKAAELFHSIQTVDSAKLARRLNESGRPLDVMIEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTM
PPWSEDPEAPRAIFRTLRELAAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRRNKP
>Mature_221_residues
MEGLTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQEFEGKAPEVAGLPGARFHLI
GHLQSNKSSKAAELFHSIQTVDSAKLARRLNESGRPLDVMIEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTM
PPWSEDPEAPRAIFRTLRELAAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRRNKP

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=240, Percent_Identity=40, Blast_Score=135, Evalue=2e-32,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=43.3476394849785, Blast_Score=160, Evalue=9e-41,
Organism=Caenorhabditis elegans, GI17533025, Length=209, Percent_Identity=36.3636363636364, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=219, Percent_Identity=39.7260273972603, Blast_Score=132, Evalue=6e-32,
Organism=Drosophila melanogaster, GI45550861, Length=241, Percent_Identity=41.49377593361, Blast_Score=154, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24189; Mature: 24189

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGLTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQ
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
EFEGKAPEVAGLPGARFHLIGHLQSNKSSKAAELFHSIQTVDSAKLARRLNESGRPLDVM
HHCCCCCCCCCCCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
IEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTMPPWSEDPEAPRAIFRTLREL
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
AAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRRNKP
HHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEGLTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQ
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
EFEGKAPEVAGLPGARFHLIGHLQSNKSSKAAELFHSIQTVDSAKLARRLNESGRPLDVM
HHCCCCCCCCCCCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
IEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTMPPWSEDPEAPRAIFRTLREL
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
AAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRRNKP
HHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]