Click here to switch to the map view.

The map label for this gene is arnC [H]

Identifier: 116620878

GI number: 116620878

Start: 2187179

End: 2188156

Strand: Reverse

Name: arnC [H]

Synonym: Acid_1759

Alternate gene names: 116620878

Gene position: 2188156-2187179 (Counterclockwise)

Preceding gene: 116620886

Following gene: 116620874

Centisome position: 21.96

GC content: 62.37

Gene sequence:

>978_bases
ATGGCAATGCTGTCCATCGTGATCCCGATCCACAACGAGGAGCCGTCCATCCTCCCGTTGTACGACCGTCTTACAGCGGT
ACTGGAACCGTTGCAGCGTCCCTACGAGATTCTCTTCGTGGACGATGCATCAGCCGACCGCAGTTTCGAGCTGCTCGCCA
ACCTGGTCGAGACCGATGGCCATCTCAAGGTAATCCGATTGCGCCGTAACTTCGGCCAGACCGCCGCCCTCTCCGCCGGC
TTCCACGAGGCCAAGGGCGACATCGTGATCGCCATGGATGGCGACCTGCAGCACGCCCCCGAGGACATCCCTGCCCTGCT
CGAAAAAATCGACCAGGGCTACGATATCGCCAGCGGCTGGCGCAAAGTGCGCGTCGATAATGCCGTCATGCGCAAGTTCC
CTTCGCGCATCGCCAACTGGATGATGGCCAAGGCCAGCGGCATGGACCTGCACGATTTCGGCACCACCTTCAAGGCCTAC
CGCGCCGAAGTCCTCAAGGACGTGAACCTCTACGGCGAGCTGCACCGGTTCATCCCCGCGCTCGCCAGCTTCTACGGCGC
GCGCGTAGTCGAAGTCCCCATCCGCAACGTGCCGCGCGCCGCCGGCGATTCGCACTACGGCATCGGCCGCACCTTCCGGG
TGCTCTTCGACATTCTCACCATCAAGTTCCTGCTCAAATATTTCACCCGTCCCATGCATTTCTTCGGGACGCTCGGCCTC
GCCGGCACCACGCTCGGCGGCGGCATCATGGCCTACCTCGCGGTTCTCAAGATCATGGGCTACGAAATCGTGATCGAGCA
CGGCCCCCTGATGATCGCCGGCTGCCTGCTCCTCCTCAGCGGCCTGATGATGTTCTCCACCGGCCTCATCGGCGAAATGA
TGATGCGCACCTACTTCGAAAGTCAGGACCGCCGCATCTACGCCGTCCGTGAAATCCTCACCCGCAAACAGCGCGGCGTC
GCCGGGGGCACCAAGTAG

Upstream 100 bases:

>100_bases
ACGTCCTCGTACAGCGCTCCCGCTGCCGTCGCCTGAAAAGGGATACGTTCCATCAGAGCGCGAAAGTATAGCACCACACG
ATGCTAAACTGAAAGTTTAC

Downstream 100 bases:

>100_bases
CCGCCAGGAATTCGCCAGCCCATCAGAGCCGCGACCGTTAGGGAGCGTTCGGTAATCGTGCCCTTCGATCTCAGTTCCGA
AGTGCCGCACTGTGAGCCAG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MAMLSIVIPIHNEEPSILPLYDRLTAVLEPLQRPYEILFVDDASADRSFELLANLVETDGHLKVIRLRRNFGQTAALSAG
FHEAKGDIVIAMDGDLQHAPEDIPALLEKIDQGYDIASGWRKVRVDNAVMRKFPSRIANWMMAKASGMDLHDFGTTFKAY
RAEVLKDVNLYGELHRFIPALASFYGARVVEVPIRNVPRAAGDSHYGIGRTFRVLFDILTIKFLLKYFTRPMHFFGTLGL
AGTTLGGGIMAYLAVLKIMGYEIVIEHGPLMIAGCLLLLSGLMMFSTGLIGEMMMRTYFESQDRRIYAVREILTRKQRGV
AGGTK

Sequences:

>Translated_325_residues
MAMLSIVIPIHNEEPSILPLYDRLTAVLEPLQRPYEILFVDDASADRSFELLANLVETDGHLKVIRLRRNFGQTAALSAG
FHEAKGDIVIAMDGDLQHAPEDIPALLEKIDQGYDIASGWRKVRVDNAVMRKFPSRIANWMMAKASGMDLHDFGTTFKAY
RAEVLKDVNLYGELHRFIPALASFYGARVVEVPIRNVPRAAGDSHYGIGRTFRVLFDILTIKFLLKYFTRPMHFFGTLGL
AGTTLGGGIMAYLAVLKIMGYEIVIEHGPLMIAGCLLLLSGLMMFSTGLIGEMMMRTYFESQDRRIYAVREILTRKQRGV
AGGTK
>Mature_324_residues
AMLSIVIPIHNEEPSILPLYDRLTAVLEPLQRPYEILFVDDASADRSFELLANLVETDGHLKVIRLRRNFGQTAALSAGF
HEAKGDIVIAMDGDLQHAPEDIPALLEKIDQGYDIASGWRKVRVDNAVMRKFPSRIANWMMAKASGMDLHDFGTTFKAYR
AEVLKDVNLYGELHRFIPALASFYGARVVEVPIRNVPRAAGDSHYGIGRTFRVLFDILTIKFLLKYFTRPMHFFGTLGLA
GTTLGGGIMAYLAVLKIMGYEIVIEHGPLMIAGCLLLLSGLMMFSTGLIGEMMMRTYFESQDRRIYAVREILTRKQRGVA
GGTK

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=230, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1788588, Length=311, Percent_Identity=32.1543408360129, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1788692, Length=312, Percent_Identity=25.9615384615385, Blast_Score=113, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6325441, Length=160, Percent_Identity=32.5, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24585265, Length=215, Percent_Identity=26.5116279069767, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 36346; Mature: 36215

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMLSIVIPIHNEEPSILPLYDRLTAVLEPLQRPYEILFVDDASADRSFELLANLVETDG
CCEEEEEEEEECCCCCEEHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCC
HLKVIRLRRNFGQTAALSAGFHEAKGDIVIAMDGDLQHAPEDIPALLEKIDQGYDIASGW
CEEEEEEHHCCCCHHHHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHCH
RKVRVDNAVMRKFPSRIANWMMAKASGMDLHDFGTTFKAYRAEVLKDVNLYGELHRFIPA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASFYGARVVEVPIRNVPRAAGDSHYGIGRTFRVLFDILTIKFLLKYFTRPMHFFGTLGL
HHHHHCCEEEEECHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
AGTTLGGGIMAYLAVLKIMGYEIVIEHGPLMIAGCLLLLSGLMMFSTGLIGEMMMRTYFE
CCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQDRRIYAVREILTRKQRGVAGGTK
CCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AMLSIVIPIHNEEPSILPLYDRLTAVLEPLQRPYEILFVDDASADRSFELLANLVETDG
CEEEEEEEEECCCCCEEHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCC
HLKVIRLRRNFGQTAALSAGFHEAKGDIVIAMDGDLQHAPEDIPALLEKIDQGYDIASGW
CEEEEEEHHCCCCHHHHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHCH
RKVRVDNAVMRKFPSRIANWMMAKASGMDLHDFGTTFKAYRAEVLKDVNLYGELHRFIPA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASFYGARVVEVPIRNVPRAAGDSHYGIGRTFRVLFDILTIKFLLKYFTRPMHFFGTLGL
HHHHHCCEEEEECHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
AGTTLGGGIMAYLAVLKIMGYEIVIEHGPLMIAGCLLLLSGLMMFSTGLIGEMMMRTYFE
CCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQDRRIYAVREILTRKQRGVAGGTK
CCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA