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The map label for this gene is psd

Identifier: 116620836

GI number: 116620836

Start: 2132861

End: 2133475

Strand: Direct

Name: psd

Synonym: Acid_1717

Alternate gene names: 116620836

Gene position: 2132861-2133475 (Clockwise)

Preceding gene: 116620835

Following gene: 116620837

Centisome position: 21.4

GC content: 63.09

Gene sequence:

>615_bases
TTGAAGATCGTATCTACTGGAATCTACTACGCCCTTGCCCTCTGCGCCGCCGCCGCTCTCGTCGCCTGGCTCGCCGGACC
GCTCTTCGCCATCCCTCTCATCCTCGTCGCGCTCTTCTGCCTCTACTTCTTCCGCGATCCCGATCGTGAGATTCCCGCCG
GTCCCGTCGCCGTCTCCCCGGCCGATGGCAAAGTCGTCGCCGTCAAGCCCGAGGGCGGACTCAGTCGCCTCAGTATCTTC
CTGAATGTCTTCGACGTCCACGTCAACCGCACCCCAATCGCCGGCACCATCCAGAAGGTGCAGTACAAAGAGGGACAGTT
CCTGGTTGCTAGCCGCGAGGAGTGCTCCACCGATAACGAGCAGAATATCGTCACCGTCGCGGGCGATGGCACTACCGTCA
TCTTCAAACAGATCGCCGGCCTGATCGCGCGCCGCATCGTCTTCACCAAGCGGCCGGGCGACCATGTCGCGCTCGGCGAG
CGCATCGGCCTCATCAAATTCGGCTCGCGCATGGACGTCCTCTTCGGACCCGAGTGGGAAATCACCGTCCGCCCCGGCCA
GCGCGTCTCGGCCGGCAGCAGTATTATCGCCCGACGCCTCGATCGGAAATCGTAA

Upstream 100 bases:

>100_bases
GCGGCAGGTTGAGCACGGCACCGACGCGACGATCAGAACCTCAACCCCTTACACCGCCATCCCTTTAGGCGATTCCCTCC
GCACATGCGAAAATAGTAGT

Downstream 100 bases:

>100_bases
TGGCTCTCAAAGACCGCTTTGTAGATCCGAACTCTCCGGACCGCAGGCCCCGCAAAGCGGCCTACGCTCTTCCCACTCTG
TTCACGGCGGGCAATATCTT

Product: phosphatidylserine decarboxylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKIVSTGIYYALALCAAAALVAWLAGPLFAIPLILVALFCLYFFRDPDREIPAGPVAVSPADGKVVAVKPEGGLSRLSIF
LNVFDVHVNRTPIAGTIQKVQYKEGQFLVASREECSTDNEQNIVTVAGDGTTVIFKQIAGLIARRIVFTKRPGDHVALGE
RIGLIKFGSRMDVLFGPEWEITVRPGQRVSAGSSIIARRLDRKS

Sequences:

>Translated_204_residues
MKIVSTGIYYALALCAAAALVAWLAGPLFAIPLILVALFCLYFFRDPDREIPAGPVAVSPADGKVVAVKPEGGLSRLSIF
LNVFDVHVNRTPIAGTIQKVQYKEGQFLVASREECSTDNEQNIVTVAGDGTTVIFKQIAGLIARRIVFTKRPGDHVALGE
RIGLIKFGSRMDVLFGPEWEITVRPGQRVSAGSSIIARRLDRKS
>Mature_204_residues
MKIVSTGIYYALALCAAAALVAWLAGPLFAIPLILVALFCLYFFRDPDREIPAGPVAVSPADGKVVAVKPEGGLSRLSIF
LNVFDVHVNRTPIAGTIQKVQYKEGQFLVASREECSTDNEQNIVTVAGDGTTVIFKQIAGLIARRIVFTKRPGDHVALGE
RIGLIKFGSRMDVLFGPEWEITVRPGQRVSAGSSIIARRLDRKS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_SOLUE (Q027V0)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_822992.1
- STRING:   Q027V0
- GeneID:   4430411
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_1717
- NMPDR:   fig|234267.9.peg.1626
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   ESENNER
- ProtClustDB:   CLSK774759
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 22110; Mature: 22110

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVSTGIYYALALCAAAALVAWLAGPLFAIPLILVALFCLYFFRDPDREIPAGPVAVSP
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
ADGKVVAVKPEGGLSRLSIFLNVFDVHVNRTPIAGTIQKVQYKEGQFLVASREECSTDNE
CCCEEEEECCCCCHHHHHHHHHHHEEEECCCCCHHHHHHEEECCCCEEEECCHHCCCCCC
QNIVTVAGDGTTVIFKQIAGLIARRIVFTKRPGDHVALGERIGLIKFGSRMDVLFGPEWE
CCEEEEECCCCHHHHHHHHHHHHHHHHEECCCCCCEECCCEECEEEECCCEEEEECCCEE
ITVRPGQRVSAGSSIIARRLDRKS
EEECCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKIVSTGIYYALALCAAAALVAWLAGPLFAIPLILVALFCLYFFRDPDREIPAGPVAVSP
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
ADGKVVAVKPEGGLSRLSIFLNVFDVHVNRTPIAGTIQKVQYKEGQFLVASREECSTDNE
CCCEEEEECCCCCHHHHHHHHHHHEEEECCCCCHHHHHHEEECCCCEEEECCHHCCCCCC
QNIVTVAGDGTTVIFKQIAGLIARRIVFTKRPGDHVALGERIGLIKFGSRMDVLFGPEWE
CCEEEEECCCCHHHHHHHHHHHHHHHHEECCCCCCEECCCEECEEEECCCEEEEECCCEE
ITVRPGQRVSAGSSIIARRLDRKS
EEECCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA