Click here to switch to the map view.

The map label for this gene is cbaA [H]

Identifier: 116620794

GI number: 116620794

Start: 2081772

End: 2082863

Strand: Reverse

Name: cbaA [H]

Synonym: Acid_1675

Alternate gene names: 116620794

Gene position: 2082863-2081772 (Counterclockwise)

Preceding gene: 116620795

Following gene: 116620793

Centisome position: 20.9

GC content: 56.14

Gene sequence:

>1092_bases
TTGATGACGCCGCTTTCCAAATCATCTGCCTCGACGTTGAAAGATGCCTGGTATTGTGCGGGCTGGTCACATGAGCTTCG
ATATCCTCGTATCCTAGGCAGGAAGCTTCTGAATCGCCAACTTGCGCTGTTTCGGGATCAGCAAGGACGGCTGCACGCAC
TGGATGCGGCCTGCCCTCACCGCGGTGCCGACCTCTCGCTCGGTCATCTCGTCGAGGGTCACATTCAGTGTCCCCTGCAT
GGCTGGCGTTTCGACGACACCGGCAAGTGTGTTTGCATACCGTCTCAACTTCCCGAGGTCAAAATCCCCCCGGGTGCCAT
GGCTTCCACATATCGGGTAGTTGAGCGCCAGGGAATCATCTGGATCTGGATGGGCGCCGTGCGCGACCCGATGCCCGCTC
CCCCGCATCAGGATGTCTGGGAGGCATCCCCGGCACGGCATCGCCATTTCCTGCCGCCTCAGCTCTGGCGATGTTCCTTC
TTCAACGCTGTCGAGAACGCCATCGACAACACTCATCTTCCGTTCTTGCACGCAGGATTGCTCGGACCTAACCAGCAGCA
ACTCTATCCTACCCAGAATCTGGTGGTCGATGAGGATCTGCGCGGATTTCGAGGTGAGGACTCTCCCGAAAGCCCATGGG
GCTTCCCTCGATCGCGGCAAATATTCGATGGCGTCTTAGAGCGCGTAGTTGCCGCATGGATGGGAATGAATGAAATTCGG
CGTGAATACTATCGCTTCGATCTTGGCGGATCACTATCCTTCTACGTTGAATGGGATAGCGGAACATGGGATGTGCTGGC
CGGGCATTGGACGCCGTCGGATTCATTTCACTCATGGTATTTCGGAATGTCGATCCGAACTCGAGCGACGCACTGGGTCG
GGGATATTTTTCAGAAATGGTTCGGGAAAAAGCTCTCCCTGCAAGACAAATTGGGAGTTGAAAGGCTGCTATCCAATGAG
CCCGACAATCTTCCGTCTACGGTCAGCGTGGTCGGTGACGAACCAGCGCTAACCTTTCGTCGGATCCACAACTACCATGT
CAATCATCAGCAAGGAGACGGACTCGCGGCTTCGTCGACCAACTGGGTGTGA

Upstream 100 bases:

>100_bases
AAGAGCCGCTGATTCCCCTTCAGCGGCGTCACTTGTTGCGCGATCCTCAATAGTCCCACATGACCTGTCCGATTACGGTA
GAGTAACTCGTTGGGGGGAT

Downstream 100 bases:

>100_bases
CTGCAACGGCTTTTTCATACCTGTCGGCCCGGCTCGACAACCACACCGATATGCCGCATAGACCCGGCAAAAAGAGCATC
GCATCCCTTTTTTCTAGCTT

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MMTPLSKSSASTLKDAWYCAGWSHELRYPRILGRKLLNRQLALFRDQQGRLHALDAACPHRGADLSLGHLVEGHIQCPLH
GWRFDDTGKCVCIPSQLPEVKIPPGAMASTYRVVERQGIIWIWMGAVRDPMPAPPHQDVWEASPARHRHFLPPQLWRCSF
FNAVENAIDNTHLPFLHAGLLGPNQQQLYPTQNLVVDEDLRGFRGEDSPESPWGFPRSRQIFDGVLERVVAAWMGMNEIR
REYYRFDLGGSLSFYVEWDSGTWDVLAGHWTPSDSFHSWYFGMSIRTRATHWVGDIFQKWFGKKLSLQDKLGVERLLSNE
PDNLPSTVSVVGDEPALTFRRIHNYHVNHQQGDGLAASSTNWV

Sequences:

>Translated_363_residues
MMTPLSKSSASTLKDAWYCAGWSHELRYPRILGRKLLNRQLALFRDQQGRLHALDAACPHRGADLSLGHLVEGHIQCPLH
GWRFDDTGKCVCIPSQLPEVKIPPGAMASTYRVVERQGIIWIWMGAVRDPMPAPPHQDVWEASPARHRHFLPPQLWRCSF
FNAVENAIDNTHLPFLHAGLLGPNQQQLYPTQNLVVDEDLRGFRGEDSPESPWGFPRSRQIFDGVLERVVAAWMGMNEIR
REYYRFDLGGSLSFYVEWDSGTWDVLAGHWTPSDSFHSWYFGMSIRTRATHWVGDIFQKWFGKKLSLQDKLGVERLLSNE
PDNLPSTVSVVGDEPALTFRRIHNYHVNHQQGDGLAASSTNWV
>Mature_363_residues
MMTPLSKSSASTLKDAWYCAGWSHELRYPRILGRKLLNRQLALFRDQQGRLHALDAACPHRGADLSLGHLVEGHIQCPLH
GWRFDDTGKCVCIPSQLPEVKIPPGAMASTYRVVERQGIIWIWMGAVRDPMPAPPHQDVWEASPARHRHFLPPQLWRCSF
FNAVENAIDNTHLPFLHAGLLGPNQQQLYPTQNLVVDEDLRGFRGEDSPESPWGFPRSRQIFDGVLERVVAAWMGMNEIR
REYYRFDLGGSLSFYVEWDSGTWDVLAGHWTPSDSFHSWYFGMSIRTRATHWVGDIFQKWFGKKLSLQDKLGVERLLSNE
PDNLPSTVSVVGDEPALTFRRIHNYHVNHQQGDGLAASSTNWV

Specific function: Unknown

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71983709, Length=112, Percent_Identity=37.5, Blast_Score=81, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: NA

Molecular weight: Translated: 41429; Mature: 41429

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTPLSKSSASTLKDAWYCAGWSHELRYPRILGRKLLNRQLALFRDQQGRLHALDAACPH
CCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
RGADLSLGHLVEGHIQCPLHGWRFDDTGKCVCIPSQLPEVKIPPGAMASTYRVVERQGII
CCCCCCHHHEEECEEECCCCCCEECCCCCEEEECCCCCCEECCCCCHHHHHHHHHHCCEE
WIWMGAVRDPMPAPPHQDVWEASPARHRHFLPPQLWRCSFFNAVENAIDNTHLPFLHAGL
EEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC
LGPNQQQLYPTQNLVVDEDLRGFRGEDSPESPWGFPRSRQIFDGVLERVVAAWMGMNEIR
CCCCHHHCCCCCCEEECCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
REYYRFDLGGSLSFYVEWDSGTWDVLAGHWTPSDSFHSWYFGMSIRTRATHWVGDIFQKW
HHHHEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHH
FGKKLSLQDKLGVERLLSNEPDNLPSTVSVVGDEPALTFRRIHNYHVNHQQGDGLAASST
CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCEECCCC
NWV
CCC
>Mature Secondary Structure
MMTPLSKSSASTLKDAWYCAGWSHELRYPRILGRKLLNRQLALFRDQQGRLHALDAACPH
CCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
RGADLSLGHLVEGHIQCPLHGWRFDDTGKCVCIPSQLPEVKIPPGAMASTYRVVERQGII
CCCCCCHHHEEECEEECCCCCCEECCCCCEEEECCCCCCEECCCCCHHHHHHHHHHCCEE
WIWMGAVRDPMPAPPHQDVWEASPARHRHFLPPQLWRCSFFNAVENAIDNTHLPFLHAGL
EEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC
LGPNQQQLYPTQNLVVDEDLRGFRGEDSPESPWGFPRSRQIFDGVLERVVAAWMGMNEIR
CCCCHHHCCCCCCEEECCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
REYYRFDLGGSLSFYVEWDSGTWDVLAGHWTPSDSFHSWYFGMSIRTRATHWVGDIFQKW
HHHHEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHH
FGKKLSLQDKLGVERLLSNEPDNLPSTVSVVGDEPALTFRRIHNYHVNHQQGDGLAASST
CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCEECCCC
NWV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7704279 [H]