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The map label for this gene is 116620748

Identifier: 116620748

GI number: 116620748

Start: 2015386

End: 2015967

Strand: Direct

Name: 116620748

Synonym: Acid_1629

Alternate gene names: NA

Gene position: 2015386-2015967 (Clockwise)

Preceding gene: 116620744

Following gene: 116620750

Centisome position: 20.22

GC content: 59.11

Gene sequence:

>582_bases
GTGAACGGCTCATGCCGCGCGCAGACTTACGCGAGATTACGCAACGCCTGCAGTTTTGGAACTGTGGTGAGAAGCAGGGC
GCTCAATGAACTTGTGCCCCTCGTCTACAGCGAGCTTCGCAAAATCGCGTCAGGCTACTTACGGCGCGAGCGGCCCGACC
ACACTCTGCGGACCACGGCGCTTGTCCACGAAGCGTACATTAGGCTGGCGAACCAAACGCATCTGGAATGCCAGGGTCGT
ACCCACTTTTATGCCATTGCCGCGCACTTGATGCGGCAAATCCTGGTGGACCATGCCCGCGAGCGCAATGCCGTAAAGCG
GGGCGGCGGCAACAAAGTCGCGCTCGAAGAAGCGGATGCTGCCCTCTCAGAGGGAAGGGCAGTGGACTTGATCCAATTGG
ATCACGCGTTGGACAAACTGGCAGAGCTTGATCCGCGGCAGAGCCGAATTGTGGAGATGAGATTCTTCGCGGGGTTGACC
GAAGATGAAATTGCCGAGGTGCTGGGTATCGCGCCGGTCACGGTGAAGCGCGACTGGCGCGCCGCGAAGTTGTTACTGTT
TAAGCTGCTTTCCCCGCGTTGA

Upstream 100 bases:

>100_bases
TTGCAGCTGGCGAGTTGCAGCTGGCGATGGCGATTGCGTCGAAGGGAAATGTCGAATGGGTCGCGAATTTGGCTTAATGT
AGTGTACAATCGCCGCTAGG

Downstream 100 bases:

>100_bases
TTGCCGAGATAACCTGCGAGTTCTGTTGTTTATTGCGCGCTTGCGCCCACAAGTGCTACAGCTGTCGCAGCGGCTCAGAG
GAGCGGTCAACGACCACACT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNGSCRAQTYARLRNACSFGTVVRSRALNELVPLVYSELRKIASGYLRRERPDHTLRTTALVHEAYIRLANQTHLECQGR
THFYAIAAHLMRQILVDHARERNAVKRGGGNKVALEEADAALSEGRAVDLIQLDHALDKLAELDPRQSRIVEMRFFAGLT
EDEIAEVLGIAPVTVKRDWRAAKLLLFKLLSPR

Sequences:

>Translated_193_residues
MNGSCRAQTYARLRNACSFGTVVRSRALNELVPLVYSELRKIASGYLRRERPDHTLRTTALVHEAYIRLANQTHLECQGR
THFYAIAAHLMRQILVDHARERNAVKRGGGNKVALEEADAALSEGRAVDLIQLDHALDKLAELDPRQSRIVEMRFFAGLT
EDEIAEVLGIAPVTVKRDWRAAKLLLFKLLSPR
>Mature_193_residues
MNGSCRAQTYARLRNACSFGTVVRSRALNELVPLVYSELRKIASGYLRRERPDHTLRTTALVHEAYIRLANQTHLECQGR
THFYAIAAHLMRQILVDHARERNAVKRGGGNKVALEEADAALSEGRAVDLIQLDHALDKLAELDPRQSRIVEMRFFAGLT
EDEIAEVLGIAPVTVKRDWRAAKLLLFKLLSPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21781; Mature: 21781

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGSCRAQTYARLRNACSFGTVVRSRALNELVPLVYSELRKIASGYLRRERPDHTLRTTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LVHEAYIRLANQTHLECQGRTHFYAIAAHLMRQILVDHARERNAVKRGGGNKVALEEADA
HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH
ALSEGRAVDLIQLDHALDKLAELDPRQSRIVEMRFFAGLTEDEIAEVLGIAPVTVKRDWR
HHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEECCCHH
AAKLLLFKLLSPR
HHHHHHHHHHCCC
>Mature Secondary Structure
MNGSCRAQTYARLRNACSFGTVVRSRALNELVPLVYSELRKIASGYLRRERPDHTLRTTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LVHEAYIRLANQTHLECQGRTHFYAIAAHLMRQILVDHARERNAVKRGGGNKVALEEADA
HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHH
ALSEGRAVDLIQLDHALDKLAELDPRQSRIVEMRFFAGLTEDEIAEVLGIAPVTVKRDWR
HHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEECCCHH
AAKLLLFKLLSPR
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA