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The map label for this gene is 116620742

Identifier: 116620742

GI number: 116620742

Start: 2006270

End: 2007340

Strand: Reverse

Name: 116620742

Synonym: Acid_1623

Alternate gene names: NA

Gene position: 2007340-2006270 (Counterclockwise)

Preceding gene: 116620745

Following gene: 116620741

Centisome position: 20.14

GC content: 61.06

Gene sequence:

>1071_bases
ATGCAGGACAACACATGGGCGCGGCTCTTGGCCTACGTCACTGGTCTGGTAAACCAGCGCCTGCTCCTCCAGTGCGAGTA
CCTGGCCGCGGAGAACCGAATCCTCCGCTCGCACCTCTCTGGGCGACTCCGGCTGTCCGATCCAGGGCGCTCTACGCTTG
CTGAGTTGGGTAAGCGCCTCGGTCGGAAACATCTGGCCGAGGTCGCGTGTGTTGCTAAACCAGATACCATCCTGCCTTGG
TATCGTCGCCTGATTGCCCGCAAGTTCGACGGCTCCAAGCATCGTTCCTACCCGGGTCGCCCACGCGTCGATCCGGCAGT
CGAAGCGCTCATCATCCGCATCGCCCAAGAGAACTCCGGCTGGGGCTATGACCGCATCGCCGGCGCACTTGCCAACCTCG
GCCACCGCGCCTCGGATCAAACCATCGGAAACATTCTGAAGCGCCACGGCATCGCACCAGCACCCAAACGCAGCCAGAAC
ACCACCTGGAAGGACTTCATTTCGGCGCACATGGCGGTCCTGGCCAGCACTGACGTCCTTACGGTCGAGGTTCTCACCTG
GCGCGGCATCGCAACCTACTACGTCCTCTTCTTTCTTCACTTGGAATCCCGGCGCGTTACCCTCGCAGGCATCACCCGGC
ACCCCACGAAAGCCTGGGTCACTCAGATGGCGCGCAACGCCATGGAGCACACCTCGGGCGTGGTCCGTCGATGCCGTTAC
GCCCTGCATGATCGTGATGCCAAATTCTGCATAGCATTCGACGACGTACTCGCGTCAGAGGGCATCCGCTGTCTAAGGCT
TCCACCACGCAGCCCGAATCTGAACGCATTCACGGAACGCTGGGTGCGATCCGTCAAAGAGGAATGCCTCTCCACGCTTA
TCCGGTTCGGAGAACGCTCACTCCAACGGGCTCTAACAGAGTTCATCGCGCATTATCATTCGGAGCGCAATCACCAGGGC
AAAGGAAGCGAGTTGCTCTTCCCTGCCCCGGTGACGAAAACGCGTCACCGAAGCGTCCGTTGTCGCGACCGTCTCGGCGG
CCTGCTTCGGTACTACTGCCGAGCCGCTTAA

Upstream 100 bases:

>100_bases
GCCGTAATGTTCCGGTTTCCGCCGTTGACGTTGAGTACCCGTTGGGCCAAAATACCGATCGAAACAGTCCCCACGAGACC
GGTACTATGTTAATTTCTCT

Downstream 100 bases:

>100_bases
TTATTTTGGCCCTGGGCCAGTATACCGTTTTGGCCATGCGGATCGCTCATTTCGTGCCTGCTCGCGGTAACCGTGGGCGA
TGCGGCGAGGAGATGCAACG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase; Transposase; Integrase Catalytic Subunit; LOW QUALITY PROTEIN Integrase; Transposase IS; Tranposase; LOW QUALITY PROTEIN Transposase

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MQDNTWARLLAYVTGLVNQRLLLQCEYLAAENRILRSHLSGRLRLSDPGRSTLAELGKRLGRKHLAEVACVAKPDTILPW
YRRLIARKFDGSKHRSYPGRPRVDPAVEALIIRIAQENSGWGYDRIAGALANLGHRASDQTIGNILKRHGIAPAPKRSQN
TTWKDFISAHMAVLASTDVLTVEVLTWRGIATYYVLFFLHLESRRVTLAGITRHPTKAWVTQMARNAMEHTSGVVRRCRY
ALHDRDAKFCIAFDDVLASEGIRCLRLPPRSPNLNAFTERWVRSVKEECLSTLIRFGERSLQRALTEFIAHYHSERNHQG
KGSELLFPAPVTKTRHRSVRCRDRLGGLLRYYCRAA

Sequences:

>Translated_356_residues
MQDNTWARLLAYVTGLVNQRLLLQCEYLAAENRILRSHLSGRLRLSDPGRSTLAELGKRLGRKHLAEVACVAKPDTILPW
YRRLIARKFDGSKHRSYPGRPRVDPAVEALIIRIAQENSGWGYDRIAGALANLGHRASDQTIGNILKRHGIAPAPKRSQN
TTWKDFISAHMAVLASTDVLTVEVLTWRGIATYYVLFFLHLESRRVTLAGITRHPTKAWVTQMARNAMEHTSGVVRRCRY
ALHDRDAKFCIAFDDVLASEGIRCLRLPPRSPNLNAFTERWVRSVKEECLSTLIRFGERSLQRALTEFIAHYHSERNHQG
KGSELLFPAPVTKTRHRSVRCRDRLGGLLRYYCRAA
>Mature_356_residues
MQDNTWARLLAYVTGLVNQRLLLQCEYLAAENRILRSHLSGRLRLSDPGRSTLAELGKRLGRKHLAEVACVAKPDTILPW
YRRLIARKFDGSKHRSYPGRPRVDPAVEALIIRIAQENSGWGYDRIAGALANLGHRASDQTIGNILKRHGIAPAPKRSQN
TTWKDFISAHMAVLASTDVLTVEVLTWRGIATYYVLFFLHLESRRVTLAGITRHPTKAWVTQMARNAMEHTSGVVRRCRY
ALHDRDAKFCIAFDDVLASEGIRCLRLPPRSPNLNAFTERWVRSVKEECLSTLIRFGERSLQRALTEFIAHYHSERNHQG
KGSELLFPAPVTKTRHRSVRCRDRLGGLLRYYCRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40552; Mature: 40552

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDNTWARLLAYVTGLVNQRLLLQCEYLAAENRILRSHLSGRLRLSDPGRSTLAELGKRL
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH
GRKHLAEVACVAKPDTILPWYRRLIARKFDGSKHRSYPGRPRVDPAVEALIIRIAQENSG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
WGYDRIAGALANLGHRASDQTIGNILKRHGIAPAPKRSQNTTWKDFISAHMAVLASTDVL
CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
TVEVLTWRGIATYYVLFFLHLESRRVTLAGITRHPTKAWVTQMARNAMEHTSGVVRRCRY
EEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALHDRDAKFCIAFDDVLASEGIRCLRLPPRSPNLNAFTERWVRSVKEECLSTLIRFGERS
HHHCCCCCEEEEHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRALTEFIAHYHSERNHQGKGSELLFPAPVTKTRHRSVRCRDRLGGLLRYYCRAA
HHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQDNTWARLLAYVTGLVNQRLLLQCEYLAAENRILRSHLSGRLRLSDPGRSTLAELGKRL
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH
GRKHLAEVACVAKPDTILPWYRRLIARKFDGSKHRSYPGRPRVDPAVEALIIRIAQENSG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
WGYDRIAGALANLGHRASDQTIGNILKRHGIAPAPKRSQNTTWKDFISAHMAVLASTDVL
CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
TVEVLTWRGIATYYVLFFLHLESRRVTLAGITRHPTKAWVTQMARNAMEHTSGVVRRCRY
EEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALHDRDAKFCIAFDDVLASEGIRCLRLPPRSPNLNAFTERWVRSVKEECLSTLIRFGERS
HHHCCCCCEEEEHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRALTEFIAHYHSERNHQGKGSELLFPAPVTKTRHRSVRCRDRLGGLLRYYCRAA
HHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA