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The map label for this gene is 116620588

Identifier: 116620588

GI number: 116620588

Start: 1797004

End: 1797519

Strand: Reverse

Name: 116620588

Synonym: Acid_1467

Alternate gene names: NA

Gene position: 1797519-1797004 (Counterclockwise)

Preceding gene: 116620590

Following gene: 116620587

Centisome position: 18.04

GC content: 61.63

Gene sequence:

>516_bases
ATGATGAGGCAGAGCGAGCTCTACGCGAGAGCGGCCGCTGAGTGTGGGCGCATGTTGGACCGCCTTGCCGCCGGGTACGA
GGCGGACGCGGACAAGCGGCGGGACTTGAGGCAGGAGATCCATCTTCAATTGTGGCGGAGCCTGGCGGCGTTCGACGGGC
GATGCTCGCTCAAGACCTGGACGCTGCGGGTAGCCCACAACACGGCGGCTTCGTACGTGATCCGTGAGCGGCGCGTGAAC
GAGAAACTGGTCAGTTTCGAGGAGATCGAACTGAGTCTGGGGAGGGTCGAGCAGCCGGCGGACATCGATCGGGAGCGGGT
GTTACGGGATGTGCAACAGGTCATCCTGACTTTGAAACCATTGGACCGGCAGATCATGATCTCCTACCTGGAGGGGCTGG
ATGGCGCTTCGATCGCCGAGATCACGGGTCTGACGCAGGCCAACATCGCCATGAAGATCCACCGGATCAAGAAAATACTG
GCGCACCGGATTCGAAAGGAGCAGGCGCATGCGTGA

Upstream 100 bases:

>100_bases
GTACAACGGACGCTGCCTTACGCGGGTTGCGGGCAGACAGGTGCAGGGTAGTACAGGTGGTAGGACTGTTATAAAGTCGG
GGCAGGATCGACTATAGGAG

Downstream 100 bases:

>100_bases
GCTTCCTGACCTGGCGGAAGTGAGGGCCGCCTGGATCGATCAGCCCGAAGAGGAGGTCTCCGTGGATGGCGAAGGGGTTT
ACGGGCGGCGAACGCGGGAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Ecf-Type Sigma Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MMRQSELYARAAAECGRMLDRLAAGYEADADKRRDLRQEIHLQLWRSLAAFDGRCSLKTWTLRVAHNTAASYVIRERRVN
EKLVSFEEIELSLGRVEQPADIDRERVLRDVQQVILTLKPLDRQIMISYLEGLDGASIAEITGLTQANIAMKIHRIKKIL
AHRIRKEQAHA

Sequences:

>Translated_171_residues
MMRQSELYARAAAECGRMLDRLAAGYEADADKRRDLRQEIHLQLWRSLAAFDGRCSLKTWTLRVAHNTAASYVIRERRVN
EKLVSFEEIELSLGRVEQPADIDRERVLRDVQQVILTLKPLDRQIMISYLEGLDGASIAEITGLTQANIAMKIHRIKKIL
AHRIRKEQAHA
>Mature_171_residues
MMRQSELYARAAAECGRMLDRLAAGYEADADKRRDLRQEIHLQLWRSLAAFDGRCSLKTWTLRVAHNTAASYVIRERRVN
EKLVSFEEIELSLGRVEQPADIDRERVLRDVQQVILTLKPLDRQIMISYLEGLDGASIAEITGLTQANIAMKIHRIKKIL
AHRIRKEQAHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19675; Mature: 19675

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRQSELYARAAAECGRMLDRLAAGYEADADKRRDLRQEIHLQLWRSLAAFDGRCSLKTW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE
TLRVAHNTAASYVIRERRVNEKLVSFEEIELSLGRVEQPADIDRERVLRDVQQVILTLKP
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
LDRQIMISYLEGLDGASIAEITGLTQANIAMKIHRIKKILAHRIRKEQAHA
CCHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMRQSELYARAAAECGRMLDRLAAGYEADADKRRDLRQEIHLQLWRSLAAFDGRCSLKTW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE
TLRVAHNTAASYVIRERRVNEKLVSFEEIELSLGRVEQPADIDRERVLRDVQQVILTLKP
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
LDRQIMISYLEGLDGASIAEITGLTQANIAMKIHRIKKILAHRIRKEQAHA
CCHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA