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The map label for this gene is exbD [H]

Identifier: 116620406

GI number: 116620406

Start: 1581138

End: 1581566

Strand: Direct

Name: exbD [H]

Synonym: Acid_1283

Alternate gene names: 116620406

Gene position: 1581138-1581566 (Clockwise)

Preceding gene: 116620405

Following gene: 116620407

Centisome position: 15.87

GC content: 59.44

Gene sequence:

>429_bases
ATGGGAATGTCCGTCGGCGGGGCCGGTGGTGGTCCAAAAGCTGATATCAACATGACGCCCATGATCGACGTGTTGCTGGT
GCTCATCATCATTTTCATGGTGATCACGCCGCTCACGCCGAAAGGGCTTGAGGCACTGGTGCCGCAGCCGCCCCCACCCA
ACCAGAAGCCGAACCAGAGCGACCAGCGCACGGTGGTGATTGTGATTGACGCCAATCATAATATGTCCATCAACAGCGAG
GCGACGGATGAGGCGCGTCTGGGCGGCCGTCTCGAAGACATCTTCAAGACGCGTGCGGAGCGCGTCGTATTCGTGAAGGG
CGACCCCTCCCTGGATTTCCAGTGGGTGGCCAAGGCAATCGACATCGCCCATGGCGCCGGAATCGACAAAGTCGGTCTGA
TGACGGCGAAAGTGGAGGCCGGACAATAA

Upstream 100 bases:

>100_bases
AACAAGTGCAGGAAGGCGGCAAGGGCAAAGAAGGCGCGCCGGCAGCAGCACCGCCGGCCGGACAGTAACGAATTCGAAGT
TTTATTAAAGGAGCAATCTT

Downstream 100 bases:

>100_bases
TATGCGCAAGGGAATGTTGACCAGGGGCATGTTGGTTCTGGCAGTTGCCGCGTTGGCGGCCCTCAGCATCAGCTGCAACC
AGCTCAAGGCTCGCGATCAG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MGMSVGGAGGGPKADINMTPMIDVLLVLIIIFMVITPLTPKGLEALVPQPPPPNQKPNQSDQRTVVIVIDANHNMSINSE
ATDEARLGGRLEDIFKTRAERVVFVKGDPSLDFQWVAKAIDIAHGAGIDKVGLMTAKVEAGQ

Sequences:

>Translated_142_residues
MGMSVGGAGGGPKADINMTPMIDVLLVLIIIFMVITPLTPKGLEALVPQPPPPNQKPNQSDQRTVVIVIDANHNMSINSE
ATDEARLGGRLEDIFKTRAERVVFVKGDPSLDFQWVAKAIDIAHGAGIDKVGLMTAKVEAGQ
>Mature_141_residues
GMSVGGAGGGPKADINMTPMIDVLLVLIIIFMVITPLTPKGLEALVPQPPPPNQKPNQSDQRTVVIVIDANHNMSINSEA
TDEARLGGRLEDIFKTRAERVVFVKGDPSLDFQWVAKAIDIAHGAGIDKVGLMTAKVEAGQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=129, Percent_Identity=34.1085271317829, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15096; Mature: 14965

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMSVGGAGGGPKADINMTPMIDVLLVLIIIFMVITPLTPKGLEALVPQPPPPNQKPNQS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCC
DQRTVVIVIDANHNMSINSEATDEARLGGRLEDIFKTRAERVVFVKGDPSLDFQWVAKAI
CCEEEEEEEECCCCCEECCCCCCHHHHCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHH
DIAHGAGIDKVGLMTAKVEAGQ
HHHCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
GMSVGGAGGGPKADINMTPMIDVLLVLIIIFMVITPLTPKGLEALVPQPPPPNQKPNQS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCC
DQRTVVIVIDANHNMSINSEATDEARLGGRLEDIFKTRAERVVFVKGDPSLDFQWVAKAI
CCEEEEEEEECCCCCEECCCCCCHHHHCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHH
DIAHGAGIDKVGLMTAKVEAGQ
HHHCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]