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The map label for this gene is 116620332

Identifier: 116620332

GI number: 116620332

Start: 1493884

End: 1494477

Strand: Reverse

Name: 116620332

Synonym: Acid_1209

Alternate gene names: NA

Gene position: 1494477-1493884 (Counterclockwise)

Preceding gene: 116620334

Following gene: 116620331

Centisome position: 15.0

GC content: 61.78

Gene sequence:

>594_bases
ATGGGATCTGGATCTGGACCCGCCCCGGATGTAACTCAATTACTGGTCAACTGGAGTCAGGGAGACCAGGCCGCGCTCGA
ACAGCTGATGCCTTTGGTTTACGGCGAGCTGCGACGCCTGGCAGCCGCCTACTTACGCCGCGAACGCTCCAACCACACTC
TGCAGAGCACAGCGCTGGTGCATGAAGCCTTCATGCGCATGGTGCACCAGCAGGAAGTACAATGGCGCAACCGTGCGCAT
TTTTACGCAATCGCCGCGCAGATGATCCGCCGCATCCTGGTGGATTACGCACGCTCGCAGCATGCCGAGAAGCGCGGCTC
GGGTGCGATCAAACTGGAACTCGATGAAGCCATGGCGGTGGCGCAGACGGGCCCCGATGTCGATCTGCTCGGCCTCAACG
ACGCACTCGACCGGTTGGCCGAACTCGATGAACGCCAGGGACGCATCGTAGAACTCCGCTTCTTCGCCGGATTATCGATC
GAGGAAACCGCCGAAGTAATGAACCTGTCTCCGGCGAGCATCAAGCGCGAGTGGCAGACGGCGCGCGCCTGGCTCTTCCG
CGAGATGACGCGGACCGCGGCGTATGACGCGTGA

Upstream 100 bases:

>100_bases
TTCGTTTCTCATGCATCTCTCCTCTGCCCCAGTAACGCGTGTTTCGGGAAGAAACTGGCTCAGAATGGCTATTGCTGAGT
GATAATGTGAGAAAGGTTTT

Downstream 100 bases:

>100_bases
AGAGTGGCAGCGCGTAAAAGACATCCTGCACAATGCACTTGATCTGCCGCGCTCGGGGCGCGCGGCATTCCTGGACGCGG
CCTGCAATGGCGATCCCACG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; Sigma-70 Region 4 Family; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MGSGSGPAPDVTQLLVNWSQGDQAALEQLMPLVYGELRRLAAAYLRRERSNHTLQSTALVHEAFMRMVHQQEVQWRNRAH
FYAIAAQMIRRILVDYARSQHAEKRGSGAIKLELDEAMAVAQTGPDVDLLGLNDALDRLAELDERQGRIVELRFFAGLSI
EETAEVMNLSPASIKREWQTARAWLFREMTRTAAYDA

Sequences:

>Translated_197_residues
MGSGSGPAPDVTQLLVNWSQGDQAALEQLMPLVYGELRRLAAAYLRRERSNHTLQSTALVHEAFMRMVHQQEVQWRNRAH
FYAIAAQMIRRILVDYARSQHAEKRGSGAIKLELDEAMAVAQTGPDVDLLGLNDALDRLAELDERQGRIVELRFFAGLSI
EETAEVMNLSPASIKREWQTARAWLFREMTRTAAYDA
>Mature_196_residues
GSGSGPAPDVTQLLVNWSQGDQAALEQLMPLVYGELRRLAAAYLRRERSNHTLQSTALVHEAFMRMVHQQEVQWRNRAHF
YAIAAQMIRRILVDYARSQHAEKRGSGAIKLELDEAMAVAQTGPDVDLLGLNDALDRLAELDERQGRIVELRFFAGLSIE
ETAEVMNLSPASIKREWQTARAWLFREMTRTAAYDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22280; Mature: 22148

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSGSGPAPDVTQLLVNWSQGDQAALEQLMPLVYGELRRLAAAYLRRERSNHTLQSTALV
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HEAFMRMVHQQEVQWRNRAHFYAIAAQMIRRILVDYARSQHAEKRGSGAIKLELDEAMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH
AQTGPDVDLLGLNDALDRLAELDERQGRIVELRFFAGLSIEETAEVMNLSPASIKREWQT
HHCCCCEEEEECHHHHHHHHHHHHHCCCEEEEEEHHCCCHHHHHHHHCCCHHHHHHHHHH
ARAWLFREMTRTAAYDA
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GSGSGPAPDVTQLLVNWSQGDQAALEQLMPLVYGELRRLAAAYLRRERSNHTLQSTALV
CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HEAFMRMVHQQEVQWRNRAHFYAIAAQMIRRILVDYARSQHAEKRGSGAIKLELDEAMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH
AQTGPDVDLLGLNDALDRLAELDERQGRIVELRFFAGLSIEETAEVMNLSPASIKREWQT
HHCCCCEEEEECHHHHHHHHHHHHHCCCEEEEEEHHCCCHHHHHHHHCCCHHHHHHHHHH
ARAWLFREMTRTAAYDA
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA