| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is speE [H]
Identifier: 116620282
GI number: 116620282
Start: 1428683
End: 1431130
Strand: Direct
Name: speE [H]
Synonym: Acid_1159
Alternate gene names: 116620282
Gene position: 1428683-1431130 (Clockwise)
Preceding gene: 116620280
Following gene: 116620283
Centisome position: 14.34
GC content: 64.13
Gene sequence:
>2448_bases ATGGCCCAGTCCACTGAATCCATGGTGTCTACCGACGCCTCGCGGCATCTTCCACTGCTCCTACTGCTGTTCGCCGGCAG CGGGTGCGCAGCCCTGATCTACGAGACGGTCTGGTATCAGCTGTTGCAACTGGCGATCGGTTCGACTTCCGTGTCACTGG GATTCCTGCTGGCCACGTTCATGGGCGGCCTGTGCATCGGCTCCGTCGGGCTGCCGCGGATGAAATTGGCCGGGCAGCAT CCCTTGCGCGTCTATGCATGGCTGGAACTTGGGATCGGTGTGTGCGCGATCCTGGTCCACTTCCTGCTGCCGTTGATCAA CATGGTCTATGTGGCAGGCGCCGAGGCGGGGATGCCGGGGATGTTGCTGCGCGGTTTCATCTCGGCCTTTTGCCTGCTGC CGCCGACGATCCTGATGGGCGCATCCCTGCCGGCGATTGTGCGCTGGCTGAAGTCCACTCCCAACGGCGTCTCCTGGTAC GGCCTCCTCTACGGCGGCAATACCGCGGGCGCGGTCTTCGGCTGCCTGCTCGCCGGATTCTACCTGCTGCGCATTTACAA CATGGCTATCGCGACCTACGTCGCAGCCGGCATCAATTTCACCATCGCCCTGGTCAGCTTCGGGCTGGCGGCGCGAACTC CGCAACAGGCCAGCGCCCCGGAAACCGACAGCGCCCCGCTCGCGGCGGCAACGTCATCCGCCGCCGACGGCATTCCGCGC TGGACCATCTACGCGGCCATCGCCCTCTCCGGCGCCACCGCGCTCGGCGCCGAAGTGGTCTGGACGCGCCTTCTCGGCAT GCTGCTCGGGCTCACGGTATACATCTTCTCGATCATTCTGGCGGTCTTCCTGATCGGCCTCGCGATTGGCAGCGCGCTCG GCTCCATGCTGCTCCGGTCCGTGAGGCCGCGCCTCGCGCTCGGCTGGAGCCAGGTGCTCCTGACCGCCGGAATCGCGTGG ACCGCATGGATCATCTCCAAGTCCTTACCCTACTGGCCGATTAATCCGCTGCTCACGATGAGCCCCTGGCACACCTTCCA GCTCGACATGGTGCGCTGCCTCTGGGCGATCCTGCCGCCGACGCTCCTCTGGGGCGCGAGTTTCCCGTTCGCCGTGGCGG CTCTGACCGAGACCGGCGACGACCCTGGAAAGACGGTGGGCAGCGTCTACGCCGCCAACACTCTCGGCGCGATTTTCGGA GCCCTCATCGTCAGCCTGGCGCTGGTTCCGTGGATCGGTACGCAGGACTCGCAGCGTGCGCTCGTCTGGATTTCGCTGGC GGGCGGCGTGCTGATCCTCGTGCCCTATATTCGCGCGCGGAAATCGCCCGGAGTTGCGGCGGCGCTCGCGGCGGGCGTGA TGGCGGCCGCGTGGCTCTCCAGTTCGCTGGCGCCGGTGCCCGGCGAATTGATCGCCTACGGCAGGCGGATGGCGATGAAC TTCGGCAGGAGCGAGGTGCTCTACACGGTCGAAGGCCGCAACTCTTCGGTCGCGATCACGCGCTGGAACGATGGCGCCAT CGAGATCGACGTGAACGGCCACGTGGAAGCGACCACCGAGCCCTACGACATGAAGCTGCAGCGCATGGTGGGCCATCTTC CCGGCATGCTGCATCCGAATGCCAAGCGCGTGCTGGGCATCGGCTTCGGCGCGGGCGTCAGCGCGGGAACCTTCACGCGG TATCCGGGAATCGAGCACATCACGGTCTGCGAGATCGAGCCGGTGATTCCGCCGACCTCGACGAAGTTTTTCGGCAAACA GAATTACGAGGTCTACCTCAACCCGAAGACGCGGGTGGTCTTCGACGACGCGCGCCACTACCTGATGACCACGAAAGACA TGTACGACATCATCGCCAGCGATCCGCTCGACGTCTTCGCCAAGGGTACGGCGGCGATCTATTCGAAGGAGTACTTCGAG GCCGTCAAGCGCCACCTGAATCCGGGCGGTCTGTTCACGCTCTACGTGCCGCTATATGAGAGCGACGTGCGCACAGTGAA GAGCGAGCTCGCGACCTTCTTCGAAGCCTTCCCGCATTCCACCATCTGGGCGAACACCGTCGGCGGCCAGGGCTACGACA TGGTCTTCATGGGGCACCTGGAAGCGCCGACTATCAATCTCGACGAGATGCAGGCACGTCTGGACCGCCCGGACTATGCG CCCGTCGCGCAGTCGCTCCACGAGATCGGCGTCAATACTATGGTGGACCTGCTCTCCAACTACGCGGGGCAGAATGCCGA TTTGGGGAAGTGGAGTGAAGGCGCGGAGATTAACCGCGATGTTGATCTGCGCCTGCAGTATCTGGGCGGGTGGGGAATCA ATTCCACGTTGGAAGATGCGATTTACCGGCAGATGCTGAAGTTCCGCCGAATGCCGACTACGCTCTTCACAGGGTCGCCC GAGCGTGTGGGCGCATTGGTGGAAGCAATTGCGCTGACGGGCCGGTAG
Upstream 100 bases:
>100_bases TTTGCGAGAAACAGTCATTGTCACGGACCAGAAAACCCCTCGCACCGTAACCCCAGGTTCCGCGAGAGCGCCCTTGCTAA GATAGGCAGTCACAATCCAT
Downstream 100 bases:
>100_bases GGCAGGGAACTGGTGGCGGCGCGCGGACTCGAACCGCGGACCTACGGATTATGAGACCGTCGCTCTAGCCAGCTGAGCTA CGCCGCCAAGATCGGAGTTT
Product: spermine synthase
Products: NA
Alternate protein names: Putrescine aminopropyltransferase; PAPT; SPDSY [H]
Number of amino acids: Translated: 815; Mature: 814
Protein sequence:
>815_residues MAQSTESMVSTDASRHLPLLLLLFAGSGCAALIYETVWYQLLQLAIGSTSVSLGFLLATFMGGLCIGSVGLPRMKLAGQH PLRVYAWLELGIGVCAILVHFLLPLINMVYVAGAEAGMPGMLLRGFISAFCLLPPTILMGASLPAIVRWLKSTPNGVSWY GLLYGGNTAGAVFGCLLAGFYLLRIYNMAIATYVAAGINFTIALVSFGLAARTPQQASAPETDSAPLAAATSSAADGIPR WTIYAAIALSGATALGAEVVWTRLLGMLLGLTVYIFSIILAVFLIGLAIGSALGSMLLRSVRPRLALGWSQVLLTAGIAW TAWIISKSLPYWPINPLLTMSPWHTFQLDMVRCLWAILPPTLLWGASFPFAVAALTETGDDPGKTVGSVYAANTLGAIFG ALIVSLALVPWIGTQDSQRALVWISLAGGVLILVPYIRARKSPGVAAALAAGVMAAAWLSSSLAPVPGELIAYGRRMAMN FGRSEVLYTVEGRNSSVAITRWNDGAIEIDVNGHVEATTEPYDMKLQRMVGHLPGMLHPNAKRVLGIGFGAGVSAGTFTR YPGIEHITVCEIEPVIPPTSTKFFGKQNYEVYLNPKTRVVFDDARHYLMTTKDMYDIIASDPLDVFAKGTAAIYSKEYFE AVKRHLNPGGLFTLYVPLYESDVRTVKSELATFFEAFPHSTIWANTVGGQGYDMVFMGHLEAPTINLDEMQARLDRPDYA PVAQSLHEIGVNTMVDLLSNYAGQNADLGKWSEGAEINRDVDLRLQYLGGWGINSTLEDAIYRQMLKFRRMPTTLFTGSP ERVGALVEAIALTGR
Sequences:
>Translated_815_residues MAQSTESMVSTDASRHLPLLLLLFAGSGCAALIYETVWYQLLQLAIGSTSVSLGFLLATFMGGLCIGSVGLPRMKLAGQH PLRVYAWLELGIGVCAILVHFLLPLINMVYVAGAEAGMPGMLLRGFISAFCLLPPTILMGASLPAIVRWLKSTPNGVSWY GLLYGGNTAGAVFGCLLAGFYLLRIYNMAIATYVAAGINFTIALVSFGLAARTPQQASAPETDSAPLAAATSSAADGIPR WTIYAAIALSGATALGAEVVWTRLLGMLLGLTVYIFSIILAVFLIGLAIGSALGSMLLRSVRPRLALGWSQVLLTAGIAW TAWIISKSLPYWPINPLLTMSPWHTFQLDMVRCLWAILPPTLLWGASFPFAVAALTETGDDPGKTVGSVYAANTLGAIFG ALIVSLALVPWIGTQDSQRALVWISLAGGVLILVPYIRARKSPGVAAALAAGVMAAAWLSSSLAPVPGELIAYGRRMAMN FGRSEVLYTVEGRNSSVAITRWNDGAIEIDVNGHVEATTEPYDMKLQRMVGHLPGMLHPNAKRVLGIGFGAGVSAGTFTR YPGIEHITVCEIEPVIPPTSTKFFGKQNYEVYLNPKTRVVFDDARHYLMTTKDMYDIIASDPLDVFAKGTAAIYSKEYFE AVKRHLNPGGLFTLYVPLYESDVRTVKSELATFFEAFPHSTIWANTVGGQGYDMVFMGHLEAPTINLDEMQARLDRPDYA PVAQSLHEIGVNTMVDLLSNYAGQNADLGKWSEGAEINRDVDLRLQYLGGWGINSTLEDAIYRQMLKFRRMPTTLFTGSP ERVGALVEAIALTGR >Mature_814_residues AQSTESMVSTDASRHLPLLLLLFAGSGCAALIYETVWYQLLQLAIGSTSVSLGFLLATFMGGLCIGSVGLPRMKLAGQHP LRVYAWLELGIGVCAILVHFLLPLINMVYVAGAEAGMPGMLLRGFISAFCLLPPTILMGASLPAIVRWLKSTPNGVSWYG LLYGGNTAGAVFGCLLAGFYLLRIYNMAIATYVAAGINFTIALVSFGLAARTPQQASAPETDSAPLAAATSSAADGIPRW TIYAAIALSGATALGAEVVWTRLLGMLLGLTVYIFSIILAVFLIGLAIGSALGSMLLRSVRPRLALGWSQVLLTAGIAWT AWIISKSLPYWPINPLLTMSPWHTFQLDMVRCLWAILPPTLLWGASFPFAVAALTETGDDPGKTVGSVYAANTLGAIFGA LIVSLALVPWIGTQDSQRALVWISLAGGVLILVPYIRARKSPGVAAALAAGVMAAAWLSSSLAPVPGELIAYGRRMAMNF GRSEVLYTVEGRNSSVAITRWNDGAIEIDVNGHVEATTEPYDMKLQRMVGHLPGMLHPNAKRVLGIGFGAGVSAGTFTRY PGIEHITVCEIEPVIPPTSTKFFGKQNYEVYLNPKTRVVFDDARHYLMTTKDMYDIIASDPLDVFAKGTAAIYSKEYFEA VKRHLNPGGLFTLYVPLYESDVRTVKSELATFFEAFPHSTIWANTVGGQGYDMVFMGHLEAPTINLDEMQARLDRPDYAP VAQSLHEIGVNTMVDLLSNYAGQNADLGKWSEGAEINRDVDLRLQYLGGWGINSTLEDAIYRQMLKFRRMPTTLFTGSPE RVGALVEAIALTGR
Specific function: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor [H]
COG id: COG0421
COG function: function code E; Spermidine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the spermidine/spermine synthase family [H]
Homologues:
Organism=Escherichia coli, GI1786312, Length=138, Percent_Identity=32.6086956521739, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001045 [H]
Pfam domain/function: PF01564 Spermine_synth [H]
EC number: =2.5.1.16 [H]
Molecular weight: Translated: 87770; Mature: 87639
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: PS51006 SPERMIDINE_SYNTHASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQSTESMVSTDASRHLPLLLLLFAGSGCAALIYETVWYQLLQLAIGSTSVSLGFLLATF CCCCHHHHHHCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH MGGLCIGSVGLPRMKLAGQHPLRVYAWLELGIGVCAILVHFLLPLINMVYVAGAEAGMPG HHHHHCCCCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH MLLRGFISAFCLLPPTILMGASLPAIVRWLKSTPNGVSWYGLLYGGNTAGAVFGCLLAGF HHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHH YLLRIYNMAIATYVAAGINFTIALVSFGLAARTPQQASAPETDSAPLAAATSSAADGIPR HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCHHCCCCCH WTIYAAIALSGATALGAEVVWTRLLGMLLGLTVYIFSIILAVFLIGLAIGSALGSMLLRS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRPRLALGWSQVLLTAGIAWTAWIISKSLPYWPINPLLTMSPWHTFQLDMVRCLWAILPP HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCH TLLWGASFPFAVAALTETGDDPGKTVGSVYAANTLGAIFGALIVSLALVPWIGTQDSQRA HHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE LVWISLAGGVLILVPYIRARKSPGVAAALAAGVMAAAWLSSSLAPVPGELIAYGRRMAMN EEEEEECCCHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC FGRSEVLYTVEGRNSSVAITRWNDGAIEIDVNGHVEATTEPYDMKLQRMVGHLPGMLHPN CCCCEEEEEEECCCCEEEEEEECCCEEEEEECCEEEECCCCHHHHHHHHHHHCCCCCCCC AKRVLGIGFGAGVSAGTFTRYPGIEHITVCEIEPVIPPTSTKFFGKQNYEVYLNPKTRVV CCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEE FDDARHYLMTTKDMYDIIASDPLDVFAKGTAAIYSKEYFEAVKRHLNPGGLFTLYVPLYE EECCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHH SDVRTVKSELATFFEAFPHSTIWANTVGGQGYDMVFMGHLEAPTINLDEMQARLDRPDYA HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCC PVAQSLHEIGVNTMVDLLSNYAGQNADLGKWSEGAEINRDVDLRLQYLGGWGINSTLEDA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHH IYRQMLKFRRMPTTLFTGSPERVGALVEAIALTGR HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCC >Mature Secondary Structure AQSTESMVSTDASRHLPLLLLLFAGSGCAALIYETVWYQLLQLAIGSTSVSLGFLLATF CCCHHHHHHCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH MGGLCIGSVGLPRMKLAGQHPLRVYAWLELGIGVCAILVHFLLPLINMVYVAGAEAGMPG HHHHHCCCCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH MLLRGFISAFCLLPPTILMGASLPAIVRWLKSTPNGVSWYGLLYGGNTAGAVFGCLLAGF HHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHH YLLRIYNMAIATYVAAGINFTIALVSFGLAARTPQQASAPETDSAPLAAATSSAADGIPR HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCHHCCCCCH WTIYAAIALSGATALGAEVVWTRLLGMLLGLTVYIFSIILAVFLIGLAIGSALGSMLLRS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRPRLALGWSQVLLTAGIAWTAWIISKSLPYWPINPLLTMSPWHTFQLDMVRCLWAILPP HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCH TLLWGASFPFAVAALTETGDDPGKTVGSVYAANTLGAIFGALIVSLALVPWIGTQDSQRA HHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE LVWISLAGGVLILVPYIRARKSPGVAAALAAGVMAAAWLSSSLAPVPGELIAYGRRMAMN EEEEEECCCHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC FGRSEVLYTVEGRNSSVAITRWNDGAIEIDVNGHVEATTEPYDMKLQRMVGHLPGMLHPN CCCCEEEEEEECCCCEEEEEEECCCEEEEEECCEEEECCCCHHHHHHHHHHHCCCCCCCC AKRVLGIGFGAGVSAGTFTRYPGIEHITVCEIEPVIPPTSTKFFGKQNYEVYLNPKTRVV CCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEE FDDARHYLMTTKDMYDIIASDPLDVFAKGTAAIYSKEYFEAVKRHLNPGGLFTLYVPLYE EECCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHH SDVRTVKSELATFFEAFPHSTIWANTVGGQGYDMVFMGHLEAPTINLDEMQARLDRPDYA HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCC PVAQSLHEIGVNTMVDLLSNYAGQNADLGKWSEGAEINRDVDLRLQYLGGWGINSTLEDA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHH IYRQMLKFRRMPTTLFTGSPERVGALVEAIALTGR HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA