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The map label for this gene is xseB [H]

Identifier: 116620236

GI number: 116620236

Start: 1371237

End: 1371488

Strand: Direct

Name: xseB [H]

Synonym: Acid_1113

Alternate gene names: 116620236

Gene position: 1371237-1371488 (Clockwise)

Preceding gene: 116620235

Following gene: 116620237

Centisome position: 13.76

GC content: 61.9

Gene sequence:

>252_bases
ATGGCGGAAAACCAGCCCGGCCCCAAGCCGGTCGAAACCTTTGAAACTTGTCTCGACGAGCTCGAGAGAGTCGTCCGCGA
ACTCGAAGGTGGCGACCTTACCCTCGAGCGCTCCCTCGAACTCTTCGAGCGCGGCATGGGCCTGAGCGATACCTGCCGCA
AACAGCTCGAAGCCGCCGAGACCCGCGTCGAAACCCTCATCCGCAAAGAGGGTAAAATGACCGCGGAACCCTTCCGCCCG
GAGAAGTCCTGA

Upstream 100 bases:

>100_bases
CGCCCCATGAACTCTGTTCGTTGACAACAGAGCACTTCCACGAAATCAGTGCCCAAAAGCGGGACAATTTGTCTCGCCTG
ACGGCTGTTAGAATGAGGCG

Downstream 100 bases:

>100_bases
CCGCAATGGATCTGCACCGTATGGACCTGCGCGATTACCTCGCCCAGCAGCAGCGACTGGTGGATTCGGAACTCGACCGT
CTCGTCCCCCCGGAAAGCGC

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MAENQPGPKPVETFETCLDELERVVRELEGGDLTLERSLELFERGMGLSDTCRKQLEAAETRVETLIRKEGKMTAEPFRP
EKS

Sequences:

>Translated_83_residues
MAENQPGPKPVETFETCLDELERVVRELEGGDLTLERSLELFERGMGLSDTCRKQLEAAETRVETLIRKEGKMTAEPFRP
EKS
>Mature_82_residues
AENQPGPKPVETFETCLDELERVVRELEGGDLTLERSLELFERGMGLSDTCRKQLEAAETRVETLIRKEGKMTAEPFRPE
KS

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 9454; Mature: 9323

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENQPGPKPVETFETCLDELERVVRELEGGDLTLERSLELFERGMGLSDTCRKQLEAAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
TRVETLIRKEGKMTAEPFRPEKS
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AENQPGPKPVETFETCLDELERVVRELEGGDLTLERSLELFERGMGLSDTCRKQLEAAE
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
TRVETLIRKEGKMTAEPFRPEKS
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA