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The map label for this gene is 116620220

Identifier: 116620220

GI number: 116620220

Start: 1348620

End: 1348976

Strand: Direct

Name: 116620220

Synonym: Acid_1097

Alternate gene names: NA

Gene position: 1348620-1348976 (Clockwise)

Preceding gene: 116620219

Following gene: 116620221

Centisome position: 13.53

GC content: 67.23

Gene sequence:

>357_bases
ATGAAATACCTCGTGGCCTTCATCGTCGCCGTGTGCGCCCTCTGGAAGGCGAGCGCGGCCGGGCCGCCGGGCAAGGATCT
CTTCGAACGGCGCTGCACCGGCTGCCACGCCATCGATCGCGAGAAGAGCGGCCCCCGCCTCGCCGGTGTCTACGGCCGCC
GCGCCGGCGCCATCGCGGGCTTTACCTACTCCGAGTCACTGCGCAAAAGCGGCGTGGTCTGGGACCGCGCCACGCTCGAT
CGCTGGCTTGCCAATCCCGAATCCGTGGTGCCCGACAACGACATGCCGTTTCGCCTGGCCGACGAGGGGGAGCGGCAGGC
GATCATCGAATACCTGCGGCAGATCTCGTCAAAGTAA

Upstream 100 bases:

>100_bases
CCGAGCAGTTGCGCAAGGTTCTCGGACTCGCGGACGTGCACTTCGTGCGCAAGCCGCAAAGCCTCGCGATCGTGGATGCC
ACACTGGCGGAGGCTGCGAG

Downstream 100 bases:

>100_bases
AGAGGTGGGATAATGGCCGTTTGGCCGCCTCTATTCTATGATCCCCCGGTTTTGTGTTCTCTTCGCGCTGCTCGCGGCCC
CCTGCGGCGCGCAGACGGTG

Product: class I cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKYLVAFIVAVCALWKASAAGPPGKDLFERRCTGCHAIDREKSGPRLAGVYGRRAGAIAGFTYSESLRKSGVVWDRATLD
RWLANPESVVPDNDMPFRLADEGERQAIIEYLRQISSK

Sequences:

>Translated_118_residues
MKYLVAFIVAVCALWKASAAGPPGKDLFERRCTGCHAIDREKSGPRLAGVYGRRAGAIAGFTYSESLRKSGVVWDRATLD
RWLANPESVVPDNDMPFRLADEGERQAIIEYLRQISSK
>Mature_118_residues
MKYLVAFIVAVCALWKASAAGPPGKDLFERRCTGCHAIDREKSGPRLAGVYGRRAGAIAGFTYSESLRKSGVVWDRATLD
RWLANPESVVPDNDMPFRLADEGERQAIIEYLRQISSK

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=98, Percent_Identity=31.6326530612245, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17566554, Length=92, Percent_Identity=42.3913043478261, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=98, Percent_Identity=40.8163265306122, Blast_Score=82, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6322508, Length=104, Percent_Identity=34.6153846153846, Blast_Score=77, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6320796, Length=95, Percent_Identity=33.6842105263158, Blast_Score=74, Evalue=6e-15,
Organism=Drosophila melanogaster, GI17137228, Length=97, Percent_Identity=37.1134020618557, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17137204, Length=94, Percent_Identity=36.1702127659575, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13074; Mature: 13074

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLVAFIVAVCALWKASAAGPPGKDLFERRCTGCHAIDREKSGPRLAGVYGRRAGAIAG
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEHHHCCCCCCCCC
FTYSESLRKSGVVWDRATLDRWLANPESVVPDNDMPFRLADEGERQAIIEYLRQISSK
CHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYLVAFIVAVCALWKASAAGPPGKDLFERRCTGCHAIDREKSGPRLAGVYGRRAGAIAG
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEHHHCCCCCCCCC
FTYSESLRKSGVVWDRATLDRWLANPESVVPDNDMPFRLADEGERQAIIEYLRQISSK
CHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 221822 [H]