| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is agaR [H]
Identifier: 116620061
GI number: 116620061
Start: 1174858
End: 1177032
Strand: Reverse
Name: agaR [H]
Synonym: Acid_0933
Alternate gene names: 116620061
Gene position: 1177032-1174858 (Counterclockwise)
Preceding gene: 116620070
Following gene: 116620060
Centisome position: 11.81
GC content: 63.72
Gene sequence:
>2175_bases ATGCACCGCATCGCCGCCCTCTGCCTGCTCGGCTGTATCAGCGTGCCGGCCCAAATCCAGTACATCGAATCGCGTAAGGT TTGGCTGCTCTCCACCAGCAACAGCGCGTACGCCATGGGGGTGGGGGCGGATGGCGCGCTGCGCCATTTGTATTGGGGCG CGCCGATCTGGCGGGCGGAGGATCTGGCGGGGGCGCCTGTGAGGCGCGACATCTCGTCGTTCGATCCGCGGCAGATGCTG GAGGCGGAAGAGTTCCCGGGGTGGGGCGGGCCGCGGTATTACGAGCCGGCGCTAAAGATCGCGCGGGAGGACGGGAATCG CGACCTGGTGCTGCGGTACGCGTCGCACCGAATTCAGCAGAACGACCTGGATATCGTGCTGAAGGACATCAACGACCCGA TCGAGGTCACGCTGCACTACCGGGTGTATCCGGAGCACGGGATTCTGCGGCGCTCGGCGACGATACGCAACGGGACGGCG CGAACGGTGACGGTGGAGAGCGCGCAGTCGGCCACGTGGAATCTGCCGCCCGGCGAAGGGTATCAGCTTACGTACCTGAC GGGGCGGTGGGCGGCGGAGACGCAGGTGAATCACGAGCCGATCCACGAAGGGCAGAAGGTGATCGAGAGCCGGAAGGGGC ACACCAGCCACAATTTCAATCCGTGGTTCGCGATCGACGCGGGAGACGCGGGGGAGGAGCACGGGTCAGTCTGGTTCGGC GCGCTGGGGTGGAGCGGGAACTGGCGAATGGCGATCGAGCAGACGCCGTACCGTCAGGTGCGGGTGACGGGCGGACTCAA CAGCTTCGATTTTTCGTATCCGCTGAAACCGGGCGAGACGCTGGAGACGCCGCCGTTCTACGGGGGATTTTCGAGCGCGG GATTCGGGCCGGCGTCGCGCATGATGCACCGGTTCACGCGGGAGCAGATTCTGCCGGGGGGCGCGGAGTCGCGGCTGCGT CCTGTGCTCTACAACTCGTGGGAGGCGACGACGTTCGCGGTGAACGAACAGGGGCAGCGGGAATTGGCGGCGAAGGCCGC GAAGCTCGGAGTGGAACTGTTCGTGATGGACGATGGCTGGTTCGGCGCGCGCAACAACGACCGGGCGGGATTGGGCGACT GGACGGTGAATCCGAAGAAGTTTCCGGAGGGGCTGAAGGGGCTGATCGACCACGTACACAGCCTGAAGATGGATTTCGGA CTGTGGGTGGAGCCGGAGATGGTGAACGCGGACAGCGACCTTTATAGGGCGCATCCGGATTGGGTGATCAACTTCCCGGG GCGTCCGCGCAGCGAGTTGCGCACGCAAATGATTTTGAACCTGGCGCGCAACGATGTGAAGGAGTATGTGTTCGGCTTCC TGGACAAGCTGGCAACGGAAAACGATATCCGCTATTACAAGTGGGACATGAACCGCAGCTTCAGCGAGCCGGGCTGGCCG GAGGTGGCTGGGACGGAGCAGCGCAAGATCTGGGTGCAGTATGTGCGCAACGTGTACGAGATCATCGACCGGCTGCGGGC GAAGCATCCGAAGCTGGAAATTGAGAGCTGCTCGGGCGGAGGGGGCCGGGTGGACCTGGGGATTCTGCAGAGAGTGGATG AGGTCTGGCCGAGCGACAATACGGATGCGTTCGACCGGCTGCGGATCCAGGAAGGCTTCTCGATGGCGTATCCGGCGAAG ATCATGTCGGCGTGGGTGACGGACGTGCCGAATATGAACACGCGGAGCACGCCGCTGGGGTTCCGGTTCCTGACGGCGAT GCAGGGGGCGCTCGGAATCGGCTCTAACCTCAATAAGTTCACGGAACAGGATTCGGCGCTGGCGGCGAGCATGGTGGCGA CTTATAAGCGCATCCGGGCGACGGTGCAGACGGGCGACCTATACCGGATCGCGAGTCCGCGGAGCAGCGATGTTACGGTG AACGAGTATGTGGGGGCGGACGGAAGACAGGCGGTGGTGTTCGCGATGCGGCATTCGCAGGAGTACAACACGGCGGCGCC GACGATCCGGCTGCGGGGATTGGACGAGCGGGCGGTGTATAAGCTGGAATCGGTGAACAACAAACTGGTGGAGCGCCAGG GGCAGTTCAGCGGCGCGTACCTGATGAATGCCGGGATCAACGTTAACTTGCGCGGAGATTTCGACGCGACGGCGATCGTT TTGGAGCGGCAGTAA
Upstream 100 bases:
>100_bases TAACTGCCGGCGTCCGGACCATCGCGAAGCTTGGGTGCTAGACTTCCGCTCCATGCCGGCGCACTGGCCGCTCTGCGCGC AGTGAGTTAATCTACCAGGC
Downstream 100 bases:
>100_bases AAGGGAAACCACTGAAAACACGCGGCAGGACCCGGCAAACGTAAATTTTTAGCGCTAGCCCTATTGACTTTATCGCTACA TATGCTTTAATCAGGCACAT
Product: glycoside hydrolase, clan GH-D
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 724; Mature: 724
Protein sequence:
>724_residues MHRIAALCLLGCISVPAQIQYIESRKVWLLSTSNSAYAMGVGADGALRHLYWGAPIWRAEDLAGAPVRRDISSFDPRQML EAEEFPGWGGPRYYEPALKIAREDGNRDLVLRYASHRIQQNDLDIVLKDINDPIEVTLHYRVYPEHGILRRSATIRNGTA RTVTVESAQSATWNLPPGEGYQLTYLTGRWAAETQVNHEPIHEGQKVIESRKGHTSHNFNPWFAIDAGDAGEEHGSVWFG ALGWSGNWRMAIEQTPYRQVRVTGGLNSFDFSYPLKPGETLETPPFYGGFSSAGFGPASRMMHRFTREQILPGGAESRLR PVLYNSWEATTFAVNEQGQRELAAKAAKLGVELFVMDDGWFGARNNDRAGLGDWTVNPKKFPEGLKGLIDHVHSLKMDFG LWVEPEMVNADSDLYRAHPDWVINFPGRPRSELRTQMILNLARNDVKEYVFGFLDKLATENDIRYYKWDMNRSFSEPGWP EVAGTEQRKIWVQYVRNVYEIIDRLRAKHPKLEIESCSGGGGRVDLGILQRVDEVWPSDNTDAFDRLRIQEGFSMAYPAK IMSAWVTDVPNMNTRSTPLGFRFLTAMQGALGIGSNLNKFTEQDSALAASMVATYKRIRATVQTGDLYRIASPRSSDVTV NEYVGADGRQAVVFAMRHSQEYNTAAPTIRLRGLDERAVYKLESVNNKLVERQGQFSGAYLMNAGINVNLRGDFDATAIV LERQ
Sequences:
>Translated_724_residues MHRIAALCLLGCISVPAQIQYIESRKVWLLSTSNSAYAMGVGADGALRHLYWGAPIWRAEDLAGAPVRRDISSFDPRQML EAEEFPGWGGPRYYEPALKIAREDGNRDLVLRYASHRIQQNDLDIVLKDINDPIEVTLHYRVYPEHGILRRSATIRNGTA RTVTVESAQSATWNLPPGEGYQLTYLTGRWAAETQVNHEPIHEGQKVIESRKGHTSHNFNPWFAIDAGDAGEEHGSVWFG ALGWSGNWRMAIEQTPYRQVRVTGGLNSFDFSYPLKPGETLETPPFYGGFSSAGFGPASRMMHRFTREQILPGGAESRLR PVLYNSWEATTFAVNEQGQRELAAKAAKLGVELFVMDDGWFGARNNDRAGLGDWTVNPKKFPEGLKGLIDHVHSLKMDFG LWVEPEMVNADSDLYRAHPDWVINFPGRPRSELRTQMILNLARNDVKEYVFGFLDKLATENDIRYYKWDMNRSFSEPGWP EVAGTEQRKIWVQYVRNVYEIIDRLRAKHPKLEIESCSGGGGRVDLGILQRVDEVWPSDNTDAFDRLRIQEGFSMAYPAK IMSAWVTDVPNMNTRSTPLGFRFLTAMQGALGIGSNLNKFTEQDSALAASMVATYKRIRATVQTGDLYRIASPRSSDVTV NEYVGADGRQAVVFAMRHSQEYNTAAPTIRLRGLDERAVYKLESVNNKLVERQGQFSGAYLMNAGINVNLRGDFDATAIV LERQ >Mature_724_residues MHRIAALCLLGCISVPAQIQYIESRKVWLLSTSNSAYAMGVGADGALRHLYWGAPIWRAEDLAGAPVRRDISSFDPRQML EAEEFPGWGGPRYYEPALKIAREDGNRDLVLRYASHRIQQNDLDIVLKDINDPIEVTLHYRVYPEHGILRRSATIRNGTA RTVTVESAQSATWNLPPGEGYQLTYLTGRWAAETQVNHEPIHEGQKVIESRKGHTSHNFNPWFAIDAGDAGEEHGSVWFG ALGWSGNWRMAIEQTPYRQVRVTGGLNSFDFSYPLKPGETLETPPFYGGFSSAGFGPASRMMHRFTREQILPGGAESRLR PVLYNSWEATTFAVNEQGQRELAAKAAKLGVELFVMDDGWFGARNNDRAGLGDWTVNPKKFPEGLKGLIDHVHSLKMDFG LWVEPEMVNADSDLYRAHPDWVINFPGRPRSELRTQMILNLARNDVKEYVFGFLDKLATENDIRYYKWDMNRSFSEPGWP EVAGTEQRKIWVQYVRNVYEIIDRLRAKHPKLEIESCSGGGGRVDLGILQRVDEVWPSDNTDAFDRLRIQEGFSMAYPAK IMSAWVTDVPNMNTRSTPLGFRFLTAMQGALGIGSNLNKFTEQDSALAASMVATYKRIRATVQTGDLYRIASPRSSDVTV NEYVGADGRQAVVFAMRHSQEYNTAAPTIRLRGLDERAVYKLESVNNKLVERQGQFSGAYLMNAGINVNLRGDFDATAIV LERQ
Specific function: Alpha-galactosidase associated with the raffinose operon [H]
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 81513; Mature: 81513
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRIAALCLLGCISVPAQIQYIESRKVWLLSTSNSAYAMGVGADGALRHLYWGAPIWRAE CHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCEEEEEECCCHHHHHHCCCCCCCCCC DLAGAPVRRDISSFDPRQMLEAEEFPGWGGPRYYEPALKIAREDGNRDLVLRYASHRIQQ CCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEEHHHHCCC NDLDIVLKDINDPIEVTLHYRVYPEHGILRRSATIRNGTARTVTVESAQSATWNLPPGEG CCCEEEEECCCCCEEEEEEEEEECCCCCEECCCEECCCCEEEEEEECCCCCCCCCCCCCC YQLTYLTGRWAAETQVNHEPIHEGQKVIESRKGHTSHNFNPWFAIDAGDAGEEHGSVWFG EEEEEEECCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEE ALGWSGNWRMAIEQTPYRQVRVTGGLNSFDFSYPLKPGETLETPPFYGGFSSAGFGPASR EEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH MMHRFTREQILPGGAESRLRPVLYNSWEATTFAVNEQGQRELAAKAAKLGVELFVMDDGW HHHHHHHHHCCCCCHHHCCCCCEECCCCCEEEEECCCHHHHHHHHHHHCCEEEEEEECCE FGARNNDRAGLGDWTVNPKKFPEGLKGLIDHVHSLKMDFGLWVEPEMVNADSDLYRAHPD ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEECCCCHHEECCCC WVINFPGRPRSELRTQMILNLARNDVKEYVFGFLDKLATENDIRYYKWDMNRSFSEPGWP EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC EVAGTEQRKIWVQYVRNVYEIIDRLRAKHPKLEIESCSGGGGRVDLGILQRVDEVWPSDN CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHCCCCC TDAFDRLRIQEGFSMAYPAKIMSAWVTDVPNMNTRSTPLGFRFLTAMQGALGIGSNLNKF CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH TEQDSALAASMVATYKRIRATVQTGDLYRIASPRSSDVTVNEYVGADGRQAVVFAMRHSQ HHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCEEEHHHCCCCCCEEEEEEEECCC EYNTAAPTIRLRGLDERAVYKLESVNNKLVERQGQFSGAYLMNAGINVNLRGDFDATAIV CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCCEEEE LERQ EECC >Mature Secondary Structure MHRIAALCLLGCISVPAQIQYIESRKVWLLSTSNSAYAMGVGADGALRHLYWGAPIWRAE CHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCEEEEEECCCHHHHHHCCCCCCCCCC DLAGAPVRRDISSFDPRQMLEAEEFPGWGGPRYYEPALKIAREDGNRDLVLRYASHRIQQ CCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEEHHHHCCC NDLDIVLKDINDPIEVTLHYRVYPEHGILRRSATIRNGTARTVTVESAQSATWNLPPGEG CCCEEEEECCCCCEEEEEEEEEECCCCCEECCCEECCCCEEEEEEECCCCCCCCCCCCCC YQLTYLTGRWAAETQVNHEPIHEGQKVIESRKGHTSHNFNPWFAIDAGDAGEEHGSVWFG EEEEEEECCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEE ALGWSGNWRMAIEQTPYRQVRVTGGLNSFDFSYPLKPGETLETPPFYGGFSSAGFGPASR EEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH MMHRFTREQILPGGAESRLRPVLYNSWEATTFAVNEQGQRELAAKAAKLGVELFVMDDGW HHHHHHHHHCCCCCHHHCCCCCEECCCCCEEEEECCCHHHHHHHHHHHCCEEEEEEECCE FGARNNDRAGLGDWTVNPKKFPEGLKGLIDHVHSLKMDFGLWVEPEMVNADSDLYRAHPD ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEECCCCHHEECCCC WVINFPGRPRSELRTQMILNLARNDVKEYVFGFLDKLATENDIRYYKWDMNRSFSEPGWP EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC EVAGTEQRKIWVQYVRNVYEIIDRLRAKHPKLEIESCSGGGGRVDLGILQRVDEVWPSDN CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHCCCCC TDAFDRLRIQEGFSMAYPAKIMSAWVTDVPNMNTRSTPLGFRFLTAMQGALGIGSNLNKF CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH TEQDSALAASMVATYKRIRATVQTGDLYRIASPRSSDVTVNEYVGADGRQAVVFAMRHSQ HHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCEEEHHHCCCCCCEEEEEEEECCC EYNTAAPTIRLRGLDERAVYKLESVNNKLVERQGQFSGAYLMNAGINVNLRGDFDATAIV CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCCEEEE LERQ EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA