Click here to switch to the map view.

The map label for this gene is ykwD [H]

Identifier: 116619935

GI number: 116619935

Start: 1005104

End: 1006378

Strand: Direct

Name: ykwD [H]

Synonym: Acid_0807

Alternate gene names: 116619935

Gene position: 1005104-1006378 (Clockwise)

Preceding gene: 116619933

Following gene: 116619938

Centisome position: 10.09

GC content: 60.71

Gene sequence:

>1275_bases
ATGACTAGAACACTATCCACCCTCATCGCACCTTGTGTACTGCTGATGGCGCACTCGGCCAACGCGCAGACCCCAACCCT
GGATGCGGAACAATCCGCATTCGTCAGCCTGATTAACAACTATCGGGCGCAGAACGGTGCCGGCCCCCTTCAGGTCTCCG
TTACCCTTCAACAGTCCTCGCAATGGATGAGCGGCGATATGGCCGCGAAGAACTACTTCAGCCACACCGACAGCCTCGGC
CGCGATCCCTTCACACGAATCACCGCGTTCGGTTACACCCACTACCCGGAAGGCGAGAACATCGCCGCCGGCTATTCGGA
CGCGGCGAACACGTTTACTCAGTGGCAGACCGCCTGTGATCCCGATTCCACCGGCGCCTGCACCTACGCTCATCGCCAGA
ACATGCTCAACCCGAGCTATAAGGTTCTCGGCGTTGGCCGTGTTTATAACGCCTCTGCTACCTACCGCTGGTATTGGACC
ACTGATTTCGGCGCTTACGTGGATCAAACAATCGGTTCCGCGCCCGCCCCATCGGCCCCAGTGATCACCTCCTTTTCCGC
GAGTCCCACCGCCATCGCCAGTGGCCAGGTATCCACGCTGTCCTGGAACGTTTCCGGCGCCACCTCAATCGTGATCAATA
ACGGGGTCGGCGACGTCACCTCCCTCACATCGAGAGTGGTCGTCCCGACGTCAACCACGCAGTACACCCTAACCGCGACC
AACTCCGCCGGGAGCAAGACCGCGACGGCGACCGTCACGGTCAATTCCTCCTCGCCATCACCCTCCCCTTCCCCGGCGGT
CAGCATCTGGTCCTCGACGGCGGTGCCGCCGATGTACCTGAACGTCGGTGGCGCCGTGGAGCTCGGCCTTAAGTTCCGTT
CGGATATCGCCGGTCAGATTACCGGAGTCCGTTTCTACAAGAACTCGTACAACACCGGGGTCCACAGCGGCTCACTCTGG
AGCGCGAACGGCCAGCTGCTGGCTAGCGGGGTTTTCACTAACGAGACTGCCACTGGATGGCAGACGCTCACCTTCTCAAC
CCCGGTATCCGTCGCTGCCAATACGACGTATATCGCCTCCTATCACACCAACGCCGCCACCGCCTCCGTCGGTTTCGAAC
TGCAGAGCCAAGGCGTTGACACTCCCCCGCTCCACGCTCTTCAGACCGGCGTTGACGGCTACAACGGCGTCTACATCTTC
GGGGGCGGCGGAATGTTTCCCTCACAAGGCACGTCCGGCTACAACTTCTGGGTTGACGTCCTGTTCGCGCATTAA

Upstream 100 bases:

>100_bases
TCCGCTATTCTCCTGCTCGTAATTGATCGATCCGTGACTGACACCCGTCAACCATAGCCGTGCGGTGATACCGGAATCTG
CAAGCGAAAGACATCGTTTC

Downstream 100 bases:

>100_bases
CGATTCCAGTAATGGACTCGGCTCGATGAACCCGATCTCTTTCGTGGAGTCGGGCATCGTAGTTCAATCAGCCGACACCG
ACAAGATCGTCTGGAGGATC

Product: Allergen V5/Tpx-1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTRTLSTLIAPCVLLMAHSANAQTPTLDAEQSAFVSLINNYRAQNGAGPLQVSVTLQQSSQWMSGDMAAKNYFSHTDSLG
RDPFTRITAFGYTHYPEGENIAAGYSDAANTFTQWQTACDPDSTGACTYAHRQNMLNPSYKVLGVGRVYNASATYRWYWT
TDFGAYVDQTIGSAPAPSAPVITSFSASPTAIASGQVSTLSWNVSGATSIVINNGVGDVTSLTSRVVVPTSTTQYTLTAT
NSAGSKTATATVTVNSSSPSPSPSPAVSIWSSTAVPPMYLNVGGAVELGLKFRSDIAGQITGVRFYKNSYNTGVHSGSLW
SANGQLLASGVFTNETATGWQTLTFSTPVSVAANTTYIASYHTNAATASVGFELQSQGVDTPPLHALQTGVDGYNGVYIF
GGGGMFPSQGTSGYNFWVDVLFAH

Sequences:

>Translated_424_residues
MTRTLSTLIAPCVLLMAHSANAQTPTLDAEQSAFVSLINNYRAQNGAGPLQVSVTLQQSSQWMSGDMAAKNYFSHTDSLG
RDPFTRITAFGYTHYPEGENIAAGYSDAANTFTQWQTACDPDSTGACTYAHRQNMLNPSYKVLGVGRVYNASATYRWYWT
TDFGAYVDQTIGSAPAPSAPVITSFSASPTAIASGQVSTLSWNVSGATSIVINNGVGDVTSLTSRVVVPTSTTQYTLTAT
NSAGSKTATATVTVNSSSPSPSPSPAVSIWSSTAVPPMYLNVGGAVELGLKFRSDIAGQITGVRFYKNSYNTGVHSGSLW
SANGQLLASGVFTNETATGWQTLTFSTPVSVAANTTYIASYHTNAATASVGFELQSQGVDTPPLHALQTGVDGYNGVYIF
GGGGMFPSQGTSGYNFWVDVLFAH
>Mature_423_residues
TRTLSTLIAPCVLLMAHSANAQTPTLDAEQSAFVSLINNYRAQNGAGPLQVSVTLQQSSQWMSGDMAAKNYFSHTDSLGR
DPFTRITAFGYTHYPEGENIAAGYSDAANTFTQWQTACDPDSTGACTYAHRQNMLNPSYKVLGVGRVYNASATYRWYWTT
DFGAYVDQTIGSAPAPSAPVITSFSASPTAIASGQVSTLSWNVSGATSIVINNGVGDVTSLTSRVVVPTSTTQYTLTATN
SAGSKTATATVTVNSSSPSPSPSPAVSIWSSTAVPPMYLNVGGAVELGLKFRSDIAGQITGVRFYKNSYNTGVHSGSLWS
ANGQLLASGVFTNETATGWQTLTFSTPVSVAANTTYIASYHTNAATASVGFELQSQGVDTPPLHALQTGVDGYNGVYIFG
GGGMFPSQGTSGYNFWVDVLFAH

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 44553; Mature: 44422

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTLSTLIAPCVLLMAHSANAQTPTLDAEQSAFVSLINNYRAQNGAGPLQVSVTLQQSS
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
QWMSGDMAAKNYFSHTDSLGRDPFTRITAFGYTHYPEGENIAAGYSDAANTFTQWQTACD
CCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCEECCCCCCEECCCCHHHHHHHHHHCCCC
PDSTGACTYAHRQNMLNPSYKVLGVGRVYNASATYRWYWTTDFGAYVDQTIGSAPAPSAP
CCCCCCEEEHHHHCCCCCCEEEEEECEEEECCEEEEEEEECCHHHHHHHHCCCCCCCCCC
VITSFSASPTAIASGQVSTLSWNVSGATSIVINNGVGDVTSLTSRVVVPTSTTQYTLTAT
EEEECCCCCCEEECCCEEEEEEECCCEEEEEEECCCCCHHHHHCEEEEECCCCEEEEEEE
NSAGSKTATATVTVNSSSPSPSPSPAVSIWSSTAVPPMYLNVGGAVELGLKFRSDIAGQI
CCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCEE
TGVRFYKNSYNTGVHSGSLWSANGQLLASGVFTNETATGWQTLTFSTPVSVAANTTYIAS
EEEEEEECCCCCCCCCCCEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEECCEEEEEE
YHTNAATASVGFELQSQGVDTPPLHALQTGVDGYNGVYIFGGGGMFPSQGTSGYNFWVDV
ECCCCEEEEECEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
LFAH
EEEC
>Mature Secondary Structure 
TRTLSTLIAPCVLLMAHSANAQTPTLDAEQSAFVSLINNYRAQNGAGPLQVSVTLQQSS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
QWMSGDMAAKNYFSHTDSLGRDPFTRITAFGYTHYPEGENIAAGYSDAANTFTQWQTACD
CCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCEECCCCCCEECCCCHHHHHHHHHHCCCC
PDSTGACTYAHRQNMLNPSYKVLGVGRVYNASATYRWYWTTDFGAYVDQTIGSAPAPSAP
CCCCCCEEEHHHHCCCCCCEEEEEECEEEECCEEEEEEEECCHHHHHHHHCCCCCCCCCC
VITSFSASPTAIASGQVSTLSWNVSGATSIVINNGVGDVTSLTSRVVVPTSTTQYTLTAT
EEEECCCCCCEEECCCEEEEEEECCCEEEEEEECCCCCHHHHHCEEEEECCCCEEEEEEE
NSAGSKTATATVTVNSSSPSPSPSPAVSIWSSTAVPPMYLNVGGAVELGLKFRSDIAGQI
CCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCEE
TGVRFYKNSYNTGVHSGSLWSANGQLLASGVFTNETATGWQTLTFSTPVSVAANTTYIAS
EEEEEEECCCCCCCCCCCEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEECCEEEEEE
YHTNAATASVGFELQSQGVDTPPLHALQTGVDGYNGVYIFGGGGMFPSQGTSGYNFWVDV
ECCCCEEEEECEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
LFAH
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]