BacMap

Definition	Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession	NC_008536
Length	9,965,640

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The map label for this gene is yxnA [H]

Identifier: 116619904

GI number: 116619904

Start: 975563

End: 976336

Strand: Direct

Name: yxnA [H]

Synonym: Acid_0776

Alternate gene names: 116619904

Gene position: 975563-976336 (Clockwise)

Preceding gene: 116619900

Following gene: 116619905

Centisome position: 9.79

GC content: 64.73

Gene sequence:

>774_bases
ATGCGGATCGATGGCAAAGTTGTCCTCATTACCGGAGCCTCGGAAGGCATCGGCGCGGCCTGCGCCCGGGAGTTCGCCGC
CTCCGGCGCCAAGCTTTCCCTGGCTGCCAGGAGCGAGGAAGGCCTGCGCGCCGCGGGCGGTCCAGACGCCCTGGTAACCG
CTGGTGATATAACTTCCGAGGACACCCGCCGGCGCGTCGTGGACCGTACCCTGGAACGCTTCGGCGCCATCGATATACTC
ATCAATAATGCCGGCATTGGCACCTATGCGCCCAGTTGGGAAATGCCGATGGCGGACGCGCGCTACCTCATGGAGCTGAA
TTTCTTCGCGCCCCTGGGGATGACTCAGTTGGTGGCGCCGCATATGGCCACGCGGCGCAGCGGTATGATCGTCAACGTCG
GCTCCATCGGCGGCAAGGTCGTGCTGCCCTGGATGACCCTCTACTGCGTGACGAAATTCGCCCTCGGATCGCTGACCGAA
GCCCAGCGGATGGAGCTGATGCGCGATGGAATCCGCACCATGCTGGTCTGCCCCGGATATGTGAAGACCGGATTTCAAAA
GAATGTACGCGCCGGCCAGACACCGCCGTCGGTGCAAAAGGCGCGGCGCTTCGCGATCACACCGGAGTTCTGCGCGGAGG
CCATTCGCCGCGGCGTGGAGCGCGATGCGCGCACGATAGTCACTCCGCGCTCCGGGTGGCTCCTCGTATTGGCCATGCGG
CTGTTTCCCGCGCTGGTGGAGGCGCGCATGGCGCGGATCAACGGGACAGCATGA

Upstream 100 bases:

>100_bases
GACGACGAGTTGCAGCGGGAACAGCGGGATCAGCCGCTTGGACATGGTACTATTATGACGTTTCTGCACACCCGCTTGCA
GCCTGTGCGCCTCCTATTTC

Downstream 100 bases:

>100_bases
TTCTCAAACTCAAACGCACTCCCGGGATTTACGTGGTCGGCTTCATGGGCGCTGGCAAGAGCACGGTCGGCCGCCACCTG
GCGCACCACCTGGGCTGGAG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRIDGKVVLITGASEGIGAACAREFAASGAKLSLAARSEEGLRAAGGPDALVTAGDITSEDTRRRVVDRTLERFGAIDIL
INNAGIGTYAPSWEMPMADARYLMELNFFAPLGMTQLVAPHMATRRSGMIVNVGSIGGKVVLPWMTLYCVTKFALGSLTE
AQRMELMRDGIRTMLVCPGYVKTGFQKNVRAGQTPPSVQKARRFAITPEFCAEAIRRGVERDARTIVTPRSGWLLVLAMR
LFPALVEARMARINGTA

Sequences:

>Translated_257_residues
MRIDGKVVLITGASEGIGAACAREFAASGAKLSLAARSEEGLRAAGGPDALVTAGDITSEDTRRRVVDRTLERFGAIDIL
INNAGIGTYAPSWEMPMADARYLMELNFFAPLGMTQLVAPHMATRRSGMIVNVGSIGGKVVLPWMTLYCVTKFALGSLTE
AQRMELMRDGIRTMLVCPGYVKTGFQKNVRAGQTPPSVQKARRFAITPEFCAEAIRRGVERDARTIVTPRSGWLLVLAMR
LFPALVEARMARINGTA
>Mature_257_residues
MRIDGKVVLITGASEGIGAACAREFAASGAKLSLAARSEEGLRAAGGPDALVTAGDITSEDTRRRVVDRTLERFGAIDIL
INNAGIGTYAPSWEMPMADARYLMELNFFAPLGMTQLVAPHMATRRSGMIVNVGSIGGKVVLPWMTLYCVTKFALGSLTE
AQRMELMRDGIRTMLVCPGYVKTGFQKNVRAGQTPPSVQKARRFAITPEFCAEAIRRGVERDARTIVTPRSGWLLVLAMR
LFPALVEARMARINGTA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=34.3589743589744, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI157739938, Length=241, Percent_Identity=28.2157676348548, Blast_Score=104, Evalue=6e-23,
Organism=Homo sapiens, GI7706318, Length=243, Percent_Identity=30.0411522633745, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI142976729, Length=250, Percent_Identity=27.6, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI40807363, Length=252, Percent_Identity=27.3809523809524, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=27.5862068965517, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI210032110, Length=197, Percent_Identity=30.4568527918782, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI32483357, Length=233, Percent_Identity=29.6137339055794, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI7705855, Length=213, Percent_Identity=27.6995305164319, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI33667109, Length=201, Percent_Identity=29.8507462686567, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI25282469, Length=292, Percent_Identity=25, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI59889578, Length=175, Percent_Identity=29.1428571428571, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI7657478, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4503817, Length=232, Percent_Identity=28.448275862069, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254992, Length=207, Percent_Identity=28.5024154589372, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI5031737, Length=196, Percent_Identity=29.0816326530612, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI210032112, Length=191, Percent_Identity=28.7958115183246, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI38348362, Length=175, Percent_Identity=33.7142857142857, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI32455239, Length=170, Percent_Identity=31.7647058823529, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031765, Length=170, Percent_Identity=31.7647058823529, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI109715829, Length=225, Percent_Identity=29.3333333333333, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI38424085, Length=175, Percent_Identity=33.7142857142857, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=247, Percent_Identity=28.3400809716599, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=27.3255813953488, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4557649, Length=205, Percent_Identity=27.8048780487805, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI310128830, Length=270, Percent_Identity=24.0740740740741, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI310115468, Length=270, Percent_Identity=24.0740740740741, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI150247226, Length=283, Percent_Identity=26.8551236749117, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI119392083, Length=192, Percent_Identity=30.2083333333333, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI19743808, Length=189, Percent_Identity=30.1587301587302, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7705925, Length=185, Percent_Identity=30.8108108108108, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI40548397, Length=225, Percent_Identity=24, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI214010158, Length=225, Percent_Identity=24, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI214010156, Length=225, Percent_Identity=24, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI22758144, Length=225, Percent_Identity=24, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI126723191, Length=178, Percent_Identity=29.7752808988764, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87082100, Length=200, Percent_Identity=33.5, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=33.739837398374, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786701, Length=250, Percent_Identity=29.2, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788459, Length=225, Percent_Identity=29.3333333333333, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=29.2307692307692, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=29.1005291005291, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787335, Length=190, Percent_Identity=32.1052631578947, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787820, Length=217, Percent_Identity=29.4930875576037, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367365, Length=182, Percent_Identity=31.8681318681319, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789208, Length=200, Percent_Identity=28.5, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=189, Percent_Identity=28.042328042328, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=201, Percent_Identity=39.3034825870647, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI71994604, Length=190, Percent_Identity=35.7894736842105, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17538480, Length=255, Percent_Identity=36.078431372549, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=34.0314136125654, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=38.6934673366834, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=226, Percent_Identity=33.6283185840708, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17551412, Length=282, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=224, Percent_Identity=32.1428571428571, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17561402, Length=190, Percent_Identity=35.7894736842105, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=34.5, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560220, Length=227, Percent_Identity=31.2775330396476, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=196, Percent_Identity=35.2040816326531, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17565030, Length=214, Percent_Identity=33.1775700934579, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17538486, Length=212, Percent_Identity=35.377358490566, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=233, Percent_Identity=28.3261802575107, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=231, Percent_Identity=32.4675324675325, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=200, Percent_Identity=33.5, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=200, Percent_Identity=33, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=231, Percent_Identity=29.8701298701299, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=198, Percent_Identity=34.3434343434343, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17564282, Length=265, Percent_Identity=27.5471698113208, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=198, Percent_Identity=31.8181818181818, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=196, Percent_Identity=31.1224489795918, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI193203117, Length=254, Percent_Identity=26.7716535433071, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71997402, Length=265, Percent_Identity=29.4339622641509, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17508895, Length=261, Percent_Identity=27.9693486590038, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI193203115, Length=250, Percent_Identity=27.2, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17570069, Length=191, Percent_Identity=30.8900523560209, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=30.8900523560209, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=217, Percent_Identity=36.8663594470046, Blast_Score=114, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6319635, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=217, Percent_Identity=27.6497695852535, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644339, Length=207, Percent_Identity=33.8164251207729, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=33.6787564766839, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=34.9206349206349, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21358495, Length=264, Percent_Identity=29.1666666666667, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=34.9206349206349, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=33.1683168316832, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=28.9340101522843, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24640442, Length=219, Percent_Identity=29.6803652968037, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24581726, Length=254, Percent_Identity=29.1338582677165, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21356301, Length=248, Percent_Identity=29.0322580645161, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24640492, Length=237, Percent_Identity=27.4261603375527, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28571387, Length=198, Percent_Identity=32.3232323232323, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574402, Length=187, Percent_Identity=32.0855614973262, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584744, Length=187, Percent_Identity=32.0855614973262, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355631, Length=257, Percent_Identity=27.6264591439689, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24648944, Length=193, Percent_Identity=33.160621761658, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24663911, Length=196, Percent_Identity=32.6530612244898, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=32.9608938547486, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24584748, Length=198, Percent_Identity=31.3131313131313, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076933, Length=198, Percent_Identity=31.3131313131313, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21355319, Length=193, Percent_Identity=25.3886010362694, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24649181, Length=258, Percent_Identity=24.4186046511628, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=186, Percent_Identity=31.7204301075269, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281364494, Length=204, Percent_Identity=30.3921568627451, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24644337, Length=194, Percent_Identity=32.9896907216495, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24584752, Length=189, Percent_Identity=30.6878306878307, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221510726, Length=186, Percent_Identity=26.8817204301075, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27793; Mature: 27793

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDGKVVLITGASEGIGAACAREFAASGAKLSLAARSEEGLRAAGGPDALVTAGDITSE
CCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCH
DTRRRVVDRTLERFGAIDILINNAGIGTYAPSWEMPMADARYLMELNFFAPLGMTQLVAP
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
HMATRRSGMIVNVGSIGGKVVLPWMTLYCVTKFALGSLTEAQRMELMRDGIRTMLVCPGY
HHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHEEECCCH
VKTGFQKNVRAGQTPPSVQKARRFAITPEFCAEAIRRGVERDARTIVTPRSGWLLVLAMR
HHHCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHH
LFPALVEARMARINGTA
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRIDGKVVLITGASEGIGAACAREFAASGAKLSLAARSEEGLRAAGGPDALVTAGDITSE
CCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCH
DTRRRVVDRTLERFGAIDILINNAGIGTYAPSWEMPMADARYLMELNFFAPLGMTQLVAP
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
HMATRRSGMIVNVGSIGGKVVLPWMTLYCVTKFALGSLTEAQRMELMRDGIRTMLVCPGY
HHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHEEECCCH
VKTGFQKNVRAGQTPPSVQKARRFAITPEFCAEAIRRGVERDARTIVTPRSGWLLVLAMR
HHHCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHH
LFPALVEARMARINGTA
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]