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The map label for this gene is xerD [C]

Identifier: 116619763

GI number: 116619763

Start: 791670

End: 792425

Strand: Direct

Name: xerD [C]

Synonym: Acid_0629

Alternate gene names: 116619763

Gene position: 791670-792425 (Clockwise)

Preceding gene: 116619762

Following gene: 116619764

Centisome position: 7.94

GC content: 63.62

Gene sequence:

>756_bases
GTGACCCAACTTCGCAAAATGGTGCTCGAGGAACTCGAGCGCCGTAATTACTCTCAAGCTACCGCACGTGCCTACGTCGG
CGCCATCCAGCGGTTCGCCGAACATTTCCATCGCTCGCCCGATCAACTTGGCCCCGAGCACATCCGCGAATATCAACTGC
ACCTCGTGCAGGACCGCAAACTGCATCCCCGGACCGTCATGATCCAGATGTCCGCGCTCCGCTTCTTCTTCCGCAAGGTC
CTGAAGCGGCGCTTTGATCGCGACGACCTGCCCTTGCCGAAACTTCTGCGCCGACAGATCCCCACGGTATTGAGCCGCGA
CGAAGTGGCACGACTCATCGCCGCGGCTGGCAACCTGCGTCATCGCACCATCCTGATGGCGCTTTACGCCACCGGCATGC
GGCGCGCCGAGCTCTGTCACTTGCGGATCGAGGACATCGACAAAGAACGCATGGTCCTCCACATCCGCCAGGGCAAGGGT
GGCAAGGACCGCGAGGTCCCACTCCCGCCGAAACTGCTCGCGCAACTTCGCATCCACTATCGCGCCCTGCCGCACCGGTC
GGCGTTGGTCTTCCCCAGTCTGCAATCCCGACGCCCCGATCAGCCGATGACGGAAAAGGCCGTCTGGCACGCCTGCCGCC
AAGCCGCCCGGCGGGCCGGCATCACCAAGTCCGTCCATCCGCACACGCTCCGCCACTATGCCGCGTCCCGGACTATGCCG
CGTGTGGCGTGCGAGCCGCGATTCATGGGCATTTAA

Upstream 100 bases:

>100_bases
CGTTTGAACTAAGCCGCTCGCGCGGCGGACGCTACGCGTCAGGCCGGGGCTAGCGCCCATTCTTTGGTGGGAGTATTTTC
TGGGTCACAAGGAGGTCCCT

Downstream 100 bases:

>100_bases
ATAGCGGCAACGCGGCATAGGTTTGGGTTCGTGCTTGGCACTCTGGGAGGGTGATAAACCAACTCTTCACCTTATCAAGC
ACGATTGAACGGCTGCGCCA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTQLRKMVLEELERRNYSQATARAYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSALRFFFRKV
LKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKG
GKDREVPLPPKLLAQLRIHYRALPHRSALVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASRTMP
RVACEPRFMGI

Sequences:

>Translated_251_residues
MTQLRKMVLEELERRNYSQATARAYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSALRFFFRKV
LKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKG
GKDREVPLPPKLLAQLRIHYRALPHRSALVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASRTMP
RVACEPRFMGI
>Mature_250_residues
TQLRKMVLEELERRNYSQATARAYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSALRFFFRKVL
KRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGG
KDREVPLPPKLLAQLRIHYRALPHRSALVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASRTMPR
VACEPRFMGI

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=186, Percent_Identity=33.8709677419355, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 29467; Mature: 29336

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLRKMVLEELERRNYSQATARAYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRK
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
LHPRTVMIQMSALRFFFRKVLKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLR
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
HRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHY
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RALPHRSALVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASRTMP
HHCCCCCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
RVACEPRFMGI
CHHCCCCCCCC
>Mature Secondary Structure 
TQLRKMVLEELERRNYSQATARAYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRK
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
LHPRTVMIQMSALRFFFRKVLKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLR
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
HRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHY
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RALPHRSALVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASRTMP
HHCCCCCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
RVACEPRFMGI
CHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]