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The map label for this gene is fecI [C]

Identifier: 116619281

GI number: 116619281

Start: 176743

End: 177297

Strand: Direct

Name: fecI [C]

Synonym: Acid_0137

Alternate gene names: 116619281

Gene position: 176743-177297 (Clockwise)

Preceding gene: 116619279

Following gene: 116619282

Centisome position: 1.77

GC content: 60.18

Gene sequence:

>555_bases
ATGTCGTCATACGCGTCCGGCGAACAATTCGTGGGCTTGATACGTCAGGAAAAGTCCGGTACAGCTCTCCAGGACCAGGT
CTCCCAACTGTTCGAGGAGGCGCGGGACGATGTCTACCGATATCTGTTGACCATCGGTCTGTATCCGCCGCAGGCTCAAG
AGGCTGTCCAGGAAGTCTTCCTTCGGCTGTACACGACGCTACGAAAGGGCGAAGAGATTCAAAATCCTCGCGCCTGGATC
TTTCGCGTGGCGCACAACCTCGGCCTGAAGATTCGTACACGGCAGCATTCCGAGCAGCCCTTCGACCCAGAACTCAGCGT
CCAGTACGCGTCGCAAGCCGCCTCACCCGAGGCGGAATTGCTGGAGCGAGAGCGCATGCTGCGCTTTCACGGCGCGGTGC
AGGGTTTGAGCGAACAGCAGCGCCGCTGCCTTTTTCTGCGTATGGAAGGACTGCGCTATCCGGAAATCGGCTCGGCTCTG
GGGATCAGCGCCAGCGCAGTCGGGGAGTTCCTGCGCCGCGCCATGGTGCGGTTGAAGAAGGTGCGCGATGAGTAA

Upstream 100 bases:

>100_bases
TTCATTTCAAAGACCCGGAAGACTACAAACCAACTACAGGGAATATTCTCGAAAAAGGTGTAGTTGAAAACACTCCCTCG
GGGTCTTTGGTGGTGAGGGA

Downstream 100 bases:

>100_bases
TCTCACTCTGCGACACCCCGAAGAGGGGCAGTTATTGCGCTACCTGGATGGCGAGCTGCCGCGCGGCAAAGCCAATCAGG
TGCGTTCCCACCTGGAAGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSSYASGEQFVGLIRQEKSGTALQDQVSQLFEEARDDVYRYLLTIGLYPPQAQEAVQEVFLRLYTTLRKGEEIQNPRAWI
FRVAHNLGLKIRTRQHSEQPFDPELSVQYASQAASPEAELLERERMLRFHGAVQGLSEQQRRCLFLRMEGLRYPEIGSAL
GISASAVGEFLRRAMVRLKKVRDE

Sequences:

>Translated_184_residues
MSSYASGEQFVGLIRQEKSGTALQDQVSQLFEEARDDVYRYLLTIGLYPPQAQEAVQEVFLRLYTTLRKGEEIQNPRAWI
FRVAHNLGLKIRTRQHSEQPFDPELSVQYASQAASPEAELLERERMLRFHGAVQGLSEQQRRCLFLRMEGLRYPEIGSAL
GISASAVGEFLRRAMVRLKKVRDE
>Mature_183_residues
SSYASGEQFVGLIRQEKSGTALQDQVSQLFEEARDDVYRYLLTIGLYPPQAQEAVQEVFLRLYTTLRKGEEIQNPRAWIF
RVAHNLGLKIRTRQHSEQPFDPELSVQYASQAASPEAELLERERMLRFHGAVQGLSEQQRRCLFLRMEGLRYPEIGSALG
ISASAVGEFLRRAMVRLKKVRDE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21146; Mature: 21015

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSYASGEQFVGLIRQEKSGTALQDQVSQLFEEARDDVYRYLLTIGLYPPQAQEAVQEVF
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LRLYTTLRKGEEIQNPRAWIFRVAHNLGLKIRTRQHSEQPFDPELSVQYASQAASPEAEL
HHHHHHHHCCHHCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHCCCCHHHH
LERERMLRFHGAVQGLSEQQRRCLFLRMEGLRYPEIGSALGISASAVGEFLRRAMVRLKK
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH
VRDE
HCCC
>Mature Secondary Structure 
SSYASGEQFVGLIRQEKSGTALQDQVSQLFEEARDDVYRYLLTIGLYPPQAQEAVQEVF
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LRLYTTLRKGEEIQNPRAWIFRVAHNLGLKIRTRQHSEQPFDPELSVQYASQAASPEAEL
HHHHHHHHCCHHCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHCCCCHHHH
LERERMLRFHGAVQGLSEQQRRCLFLRMEGLRYPEIGSALGISASAVGEFLRRAMVRLKK
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH
VRDE
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA