| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is 116619248
Identifier: 116619248
GI number: 116619248
Start: 140453
End: 142648
Strand: Direct
Name: 116619248
Synonym: Acid_0104
Alternate gene names: NA
Gene position: 140453-142648 (Clockwise)
Preceding gene: 116619243
Following gene: 116619250
Centisome position: 1.41
GC content: 65.62
Gene sequence:
>2196_bases ATGGCCAAGGGACGTCGTGCGCCGCAGACCGCTGCGGTAACCAAAGAACCTGCAAGCGCTGTATGGATCGGCCTGGGACT GGTGGTGGCAGTGATCGCAGTCTACGCGCGGGTTTGGGGGTTCTCCTTCGTCAACTTCGACGACCCGGACTACGTGAATA CCGGAGGACGCGGCCTGATGTGGGCCTTCACATCGGTCGAAGCGGCAAACTGGTTTCCCGTGACGCGTCTCTCGCACCTG GTGGACGGGTTGCTATTCGGCATGCGGAGCGGCTGGCATCACCTGATGAATGTGGCATGGCATGCAGCGGCTGCCGCGAT GCTGTTTGCGTTCCTGCATCGCGCGACCGGTGCACGCTGGCGAAGCGCGTTCGTGGCTTTCGTGTTCGCGCTACATCCAT TGCATGTGGAATCGGTGGCGTGGGTGGCGGAGCGCAAGGACGTGCTCAGCGCGTTCTTCTGGTTCCTGACCTTGTGGAGC TATGTCCGCTACGCGGAGCACCACGAGCGTCGCTGGTATTGGTTCACGCTGGCAGCCTTCATCGCTGGGTCGATGGCGAA GCCGATGATGGTGACGCTGCCGGTCGTGCTCGTGCTGCTGGACGTATGGCCGCTCGGCCGGCGCGCGCTCTCCGAAAAAA TTCCTTTCTTCGCGATTTCGGCGGCCAGCGCGCTCACCACCTTCGCGGTTCAGAGCGGCGCCGGCGCAGTCCGCAACCTT GCGATCTTCCCGTTGGGTCTGCGCATAGAGAACGCGCTCGTGACCTATGTGGTTTACGCCGCCAAAATGCTTTGGCCCGC GAACCTGGCGGTCTTCTATCCGTATCCCACGGATTTCGCGCCGTGGGAACCGCTGCTCGCGGCGGCGGCGGTTGGGGCGG TCTCCGTGGGAGCTTGGAGAGCGCGGCGCAACTACCCGTACCTCGCCGTCGGATGGGGCTGGTACCTGGTTACGCTGCTA CCGGTGATCGGCTTGGTGCAGGTTGGCGCGCAGGCCAGGGCAGACCGGTACATGTATCTGCCGATGACCGGACTCCTTAT CGCACTGGCGTGGGGGGCGGCCGAGTTCGCGCGACGGCGGCCGGGCGCGGCGCCTGCGATCAAGGTGCTGGCGATCGCGT TTTGCGTGGCCTGCGTGCTGGTGACGTGGGCGCAGATCGGGTACTGGCAGGACAGCCGGACGCTGTTCGCGCATGCGCTG CAGGTGACGAGCGGGAACTACCTGGCGCATCACAATCTGGGTGTCGAGTTGGCCGATGAGGGCCGGTACGAGGCCGCCAT CGCGGAATACCAGGAGGCGCTGCGTATCCGTCCGGACTATGCCCAGGCGCGGACCGATCTGGGGAATGCGTTGCTGAAAG CAGGCGGCCACGGCACGGAAGCGCTCGCGCAGTATCGCGCGGCTGTAGAGAGCATGCCGGGCTCGCCGATTCCGCACAAC GATCTGGGGAACGCGCTGGTGAAGGCCGGGCGTTTGCAGGATGCGGTCGCGGAATACCAGGCGGCGCTGGCTATCAAGCC GGAGTATGCCGAGGCGCGGAACAATCTCGGGAAGGCTCTCGCCGGAATTCCCGGCCGCGGCGGCGAAGCGGTGGGGGACT ACCAGGCTGCCCTGCGTATCAATCCTAATTTGGCGGAGGCGCACGTGAACCTGGGGGATGCCCTGGCGCAGGAGCCGGGC CGGATCGCCGACGCGATGGCGGAGTATCAGACGGCGCTGCGCATCAATCCGAACCTGGCGGAGGCGCACCACAGCCTGGG CCGCGCGTTCTCGGATATGCCGGGGCGTATGGCGGACGCGGCGGCGGAGTACGAAGCCGCTCTCCGCGCCAATCCGGATT TCGCCGAGGCGCACTACGATCTGGGGCTCGCGCTATCCTCCATGGACCGGCCGGCTGAAGCGCTGGCGCAGTTCGAAGCA GCGCTCAAGATGCGCCCCGATTACGCCGAGGCCCACAATAATATGGCGGTCACGCTGGCGGCCTTTCCGCGGCGCGCGGC GGAGGCGCTTGCCCATTTCGAGGAGGCGGTCCGGTTGAAGCCGGATTATTTCGATGCACAGTTCAACCTGGGTGTGGCGC TGGCGCAGGAGCCTGGGAAACAGCACGACGCTCTCGCCCACCTGGAGGCCGCGGAGCGCCTGCGGCCGGATGCGGAATTG GAACGAACCATCCAGCGGTTGAAATCCGGAAGGTAG
Upstream 100 bases:
>100_bases AATCCCTATGTCTCTCATGATGCCGCAAAAACGAGGGTCGCTGGCGCGTGATGATCTTCCAGTGGGGTAATGTTACTTAG GGGAGTGACGCTTCAGACGA
Downstream 100 bases:
>100_bases ACGAAAAAAGCGCCCGCCGAGAGTCGGCGGGCGCTGGTTGGAACTACGAAACGGAAGCCTTAGAACGTGATCTTGGCTCC GAGTTGTACGACGCGGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; Tetratricopeptide TPR_1 Repeat-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Peptidase; Sulfotransferase; O-GlcNAc Transferase; O-Linked N-Acetylglucosamine Transferase; TPR Repeat Protein; TPR Repeat-Containing ; TPR Domain Protein; Methyltransferase Type; TPR Repeat; Tetratricopeptide Repeat Protein; Glycosyl Transferase Family Protein; Tetratricopeptide Protein; Tetratricopeptide Tpr_2 Repeat Protein; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Porphyrin Biosynthesis Protein; Peptidase S1 And S6 Chymotrypsin/Hap; Flp Pilus Assembly Protein TadD; Tetratricopeptide Repeat Domain-Containing Protein; SPY Protein; TPR Repeat-Containing Serine/Threonin Protein Kinase; Protein Kinase
Number of amino acids: Translated: 731; Mature: 730
Protein sequence:
>731_residues MAKGRRAPQTAAVTKEPASAVWIGLGLVVAVIAVYARVWGFSFVNFDDPDYVNTGGRGLMWAFTSVEAANWFPVTRLSHL VDGLLFGMRSGWHHLMNVAWHAAAAAMLFAFLHRATGARWRSAFVAFVFALHPLHVESVAWVAERKDVLSAFFWFLTLWS YVRYAEHHERRWYWFTLAAFIAGSMAKPMMVTLPVVLVLLDVWPLGRRALSEKIPFFAISAASALTTFAVQSGAGAVRNL AIFPLGLRIENALVTYVVYAAKMLWPANLAVFYPYPTDFAPWEPLLAAAAVGAVSVGAWRARRNYPYLAVGWGWYLVTLL PVIGLVQVGAQARADRYMYLPMTGLLIALAWGAAEFARRRPGAAPAIKVLAIAFCVACVLVTWAQIGYWQDSRTLFAHAL QVTSGNYLAHHNLGVELADEGRYEAAIAEYQEALRIRPDYAQARTDLGNALLKAGGHGTEALAQYRAAVESMPGSPIPHN DLGNALVKAGRLQDAVAEYQAALAIKPEYAEARNNLGKALAGIPGRGGEAVGDYQAALRINPNLAEAHVNLGDALAQEPG RIADAMAEYQTALRINPNLAEAHHSLGRAFSDMPGRMADAAAEYEAALRANPDFAEAHYDLGLALSSMDRPAEALAQFEA ALKMRPDYAEAHNNMAVTLAAFPRRAAEALAHFEEAVRLKPDYFDAQFNLGVALAQEPGKQHDALAHLEAAERLRPDAEL ERTIQRLKSGR
Sequences:
>Translated_731_residues MAKGRRAPQTAAVTKEPASAVWIGLGLVVAVIAVYARVWGFSFVNFDDPDYVNTGGRGLMWAFTSVEAANWFPVTRLSHL VDGLLFGMRSGWHHLMNVAWHAAAAAMLFAFLHRATGARWRSAFVAFVFALHPLHVESVAWVAERKDVLSAFFWFLTLWS YVRYAEHHERRWYWFTLAAFIAGSMAKPMMVTLPVVLVLLDVWPLGRRALSEKIPFFAISAASALTTFAVQSGAGAVRNL AIFPLGLRIENALVTYVVYAAKMLWPANLAVFYPYPTDFAPWEPLLAAAAVGAVSVGAWRARRNYPYLAVGWGWYLVTLL PVIGLVQVGAQARADRYMYLPMTGLLIALAWGAAEFARRRPGAAPAIKVLAIAFCVACVLVTWAQIGYWQDSRTLFAHAL QVTSGNYLAHHNLGVELADEGRYEAAIAEYQEALRIRPDYAQARTDLGNALLKAGGHGTEALAQYRAAVESMPGSPIPHN DLGNALVKAGRLQDAVAEYQAALAIKPEYAEARNNLGKALAGIPGRGGEAVGDYQAALRINPNLAEAHVNLGDALAQEPG RIADAMAEYQTALRINPNLAEAHHSLGRAFSDMPGRMADAAAEYEAALRANPDFAEAHYDLGLALSSMDRPAEALAQFEA ALKMRPDYAEAHNNMAVTLAAFPRRAAEALAHFEEAVRLKPDYFDAQFNLGVALAQEPGKQHDALAHLEAAERLRPDAEL ERTIQRLKSGR >Mature_730_residues AKGRRAPQTAAVTKEPASAVWIGLGLVVAVIAVYARVWGFSFVNFDDPDYVNTGGRGLMWAFTSVEAANWFPVTRLSHLV DGLLFGMRSGWHHLMNVAWHAAAAAMLFAFLHRATGARWRSAFVAFVFALHPLHVESVAWVAERKDVLSAFFWFLTLWSY VRYAEHHERRWYWFTLAAFIAGSMAKPMMVTLPVVLVLLDVWPLGRRALSEKIPFFAISAASALTTFAVQSGAGAVRNLA IFPLGLRIENALVTYVVYAAKMLWPANLAVFYPYPTDFAPWEPLLAAAAVGAVSVGAWRARRNYPYLAVGWGWYLVTLLP VIGLVQVGAQARADRYMYLPMTGLLIALAWGAAEFARRRPGAAPAIKVLAIAFCVACVLVTWAQIGYWQDSRTLFAHALQ VTSGNYLAHHNLGVELADEGRYEAAIAEYQEALRIRPDYAQARTDLGNALLKAGGHGTEALAQYRAAVESMPGSPIPHND LGNALVKAGRLQDAVAEYQAALAIKPEYAEARNNLGKALAGIPGRGGEAVGDYQAALRINPNLAEAHVNLGDALAQEPGR IADAMAEYQTALRINPNLAEAHHSLGRAFSDMPGRMADAAAEYEAALRANPDFAEAHYDLGLALSSMDRPAEALAQFEAA LKMRPDYAEAHNNMAVTLAAFPRRAAEALAHFEEAVRLKPDYFDAQFNLGVALAQEPGKQHDALAHLEAAERLRPDAELE RTIQRLKSGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307148, Length=414, Percent_Identity=28.2608695652174, Blast_Score=134, Evalue=4e-31, Organism=Homo sapiens, GI32307150, Length=414, Percent_Identity=28.2608695652174, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI118766330, Length=353, Percent_Identity=28.328611898017, Blast_Score=112, Evalue=2e-24, Organism=Homo sapiens, GI118766328, Length=353, Percent_Identity=28.328611898017, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI301336134, Length=478, Percent_Identity=23.4309623430962, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI83415184, Length=478, Percent_Identity=23.4309623430962, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI224809432, Length=425, Percent_Identity=22.5882352941176, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI22749211, Length=427, Percent_Identity=24.1217798594848, Blast_Score=68, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115532692, Length=368, Percent_Identity=28.2608695652174, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI115532690, Length=368, Percent_Identity=28.2608695652174, Blast_Score=129, Evalue=7e-30, Organism=Caenorhabditis elegans, GI25147174, Length=608, Percent_Identity=23.6842105263158, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI17647755, Length=309, Percent_Identity=29.126213592233, Blast_Score=130, Evalue=4e-30, Organism=Drosophila melanogaster, GI24585827, Length=309, Percent_Identity=29.126213592233, Blast_Score=130, Evalue=4e-30, Organism=Drosophila melanogaster, GI24585829, Length=309, Percent_Identity=29.126213592233, Blast_Score=130, Evalue=4e-30, Organism=Drosophila melanogaster, GI19920486, Length=430, Percent_Identity=24.4186046511628, Blast_Score=100, Evalue=6e-21, Organism=Drosophila melanogaster, GI161076610, Length=430, Percent_Identity=24.4186046511628, Blast_Score=100, Evalue=6e-21, Organism=Drosophila melanogaster, GI24647123, Length=371, Percent_Identity=25.3369272237197, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24656717, Length=442, Percent_Identity=25.1131221719457, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI18110006, Length=442, Percent_Identity=25.1131221719457, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI24581187, Length=299, Percent_Identity=26.7558528428094, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI281364285, Length=301, Percent_Identity=27.2425249169435, Blast_Score=81, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79861; Mature: 79730
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKGRRAPQTAAVTKEPASAVWIGLGLVVAVIAVYARVWGFSFVNFDDPDYVNTGGRGLM CCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEE WAFTSVEAANWFPVTRLSHLVDGLLFGMRSGWHHLMNVAWHAAAAAMLFAFLHRATGARW EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RSAFVAFVFALHPLHVESVAWVAERKDVLSAFFWFLTLWSYVRYAEHHERRWYWFTLAAF HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IAGSMAKPMMVTLPVVLVLLDVWPLGRRALSEKIPFFAISAASALTTFAVQSGAGAVRNL HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHCCCCHHHHE AIFPLGLRIENALVTYVVYAAKMLWPANLAVFYPYPTDFAPWEPLLAAAAVGAVSVGAWR EEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH ARRNYPYLAVGWGWYLVTLLPVIGLVQVGAQARADRYMYLPMTGLLIALAWGAAEFARRR HHCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHCCCCEEECCHHHHHHHHHHHHHHHHHCC PGAAPAIKVLAIAFCVACVLVTWAQIGYWQDSRTLFAHALQVTSGNYLAHHNLGVELADE CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCEECCC GRYEAAIAEYQEALRIRPDYAQARTDLGNALLKAGGHGTEALAQYRAAVESMPGSPIPHN CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC DLGNALVKAGRLQDAVAEYQAALAIKPEYAEARNNLGKALAGIPGRGGEAVGDYQAALRI HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE NPNLAEAHVNLGDALAQEPGRIADAMAEYQTALRINPNLAEAHHSLGRAFSDMPGRMADA CCCHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH AAEYEAALRANPDFAEAHYDLGLALSSMDRPAEALAQFEAALKMRPDYAEAHNNMAVTLA HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEEEE AFPRRAAEALAHFEEAVRLKPDYFDAQFNLGVALAQEPGKQHDALAHLEAAERLRPDAEL HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCHHH ERTIQRLKSGR HHHHHHHHCCC >Mature Secondary Structure AKGRRAPQTAAVTKEPASAVWIGLGLVVAVIAVYARVWGFSFVNFDDPDYVNTGGRGLM CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEE WAFTSVEAANWFPVTRLSHLVDGLLFGMRSGWHHLMNVAWHAAAAAMLFAFLHRATGARW EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RSAFVAFVFALHPLHVESVAWVAERKDVLSAFFWFLTLWSYVRYAEHHERRWYWFTLAAF HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IAGSMAKPMMVTLPVVLVLLDVWPLGRRALSEKIPFFAISAASALTTFAVQSGAGAVRNL HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHCCCCHHHHE AIFPLGLRIENALVTYVVYAAKMLWPANLAVFYPYPTDFAPWEPLLAAAAVGAVSVGAWR EEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH ARRNYPYLAVGWGWYLVTLLPVIGLVQVGAQARADRYMYLPMTGLLIALAWGAAEFARRR HHCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHCCCCEEECCHHHHHHHHHHHHHHHHHCC PGAAPAIKVLAIAFCVACVLVTWAQIGYWQDSRTLFAHALQVTSGNYLAHHNLGVELADE CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCEECCC GRYEAAIAEYQEALRIRPDYAQARTDLGNALLKAGGHGTEALAQYRAAVESMPGSPIPHN CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC DLGNALVKAGRLQDAVAEYQAALAIKPEYAEARNNLGKALAGIPGRGGEAVGDYQAALRI HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE NPNLAEAHVNLGDALAQEPGRIADAMAEYQTALRINPNLAEAHHSLGRAFSDMPGRMADA CCCHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH AAEYEAALRANPDFAEAHYDLGLALSSMDRPAEALAQFEAALKMRPDYAEAHNNMAVTLA HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEEEE AFPRRAAEALAHFEEAVRLKPDYFDAQFNLGVALAQEPGKQHDALAHLEAAERLRPDAEL HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCHHH ERTIQRLKSGR HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA