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The map label for this gene is ybgJ [H]

Identifier: 116619206

GI number: 116619206

Start: 89536

End: 90186

Strand: Direct

Name: ybgJ [H]

Synonym: Acid_0061

Alternate gene names: 116619206

Gene position: 89536-90186 (Clockwise)

Preceding gene: 116619205

Following gene: 116619207

Centisome position: 0.9

GC content: 64.98

Gene sequence:

>651_bases
ATGACGATCCGGCCGGGGAGCGACCGCTCGCTCTTCATTTCCTTCGGCGATGCGATTTCTCTGGACACGCACCTTGAGGT
GGCGCGGCTGACGCGTTGTCTGGAAGGGGTGCGCGGCATCCTAAACCTTCATCCTGCCTACACTTCTGTGCTGGTGGATT
TCGACCCGCGATTGCGCAGCCACGCGGAGGTCGAAGCCATCGTGCGTGAGCGAATTGCGACGCACGAGCATCAACCTCCG
CCGGAGCCCAGACATATTGAAATTCCTGTGCGGTACGGGGGCGAGTTCGGGCCCGATCTCGCGGATGTGGCGCGGCATAC
CGGGATGAGCGCGGAGCGCGTAGTGGAACTGCATTCGTCGGCCGAATACCTGGTGTATTTTGTCGGATTCTCCACGTGCT
TCCCGTATCTCGGCGGGCTGCTGCCGGAGTTGGCGACTCCACGCCTCGCGGCGCCGCGCAAGCATGTTCCGGTGGGTAGC
GTGGCGATCGGCGGGGCGCAGGCCGGAATTTATCCACTGGCGTCGCCCGGCGGCTGGCGCCTGATCGGACGGACCTCGGT
GACCCTGTTCGACCGCGACGCATCGCCGCCGCCCTTGCTGCGAATGGGCGATCGGGTGCGGTTCACGATTTCACGGGAGG
GGCGCGCCTGA

Upstream 100 bases:

>100_bases
CTACCGCCCCTCGCCGGTGTACTGGGGGCTGGGGTTCACGCTGTTGGGGCTGGCGATTGCGGGGTTCGTGTCCTACCGGC
AGTGGTAAGATCAACCTGAA

Downstream 100 bases:

>100_bases
GCTCCCTCCACGTAATTTCGCCGGGCTTCCTGACCACCGTGCAGGATCCGGGGCGCTTTGGCTTTGCGCAGTACGGCATC
TCGGCGTCGGGCGCGGCCGA

Product: allophanate hydrolase subunit 1

Products: CO2; NH3

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTIRPGSDRSLFISFGDAISLDTHLEVARLTRCLEGVRGILNLHPAYTSVLVDFDPRLRSHAEVEAIVRERIATHEHQPP
PEPRHIEIPVRYGGEFGPDLADVARHTGMSAERVVELHSSAEYLVYFVGFSTCFPYLGGLLPELATPRLAAPRKHVPVGS
VAIGGAQAGIYPLASPGGWRLIGRTSVTLFDRDASPPPLLRMGDRVRFTISREGRA

Sequences:

>Translated_216_residues
MTIRPGSDRSLFISFGDAISLDTHLEVARLTRCLEGVRGILNLHPAYTSVLVDFDPRLRSHAEVEAIVRERIATHEHQPP
PEPRHIEIPVRYGGEFGPDLADVARHTGMSAERVVELHSSAEYLVYFVGFSTCFPYLGGLLPELATPRLAAPRKHVPVGS
VAIGGAQAGIYPLASPGGWRLIGRTSVTLFDRDASPPPLLRMGDRVRFTISREGRA
>Mature_215_residues
TIRPGSDRSLFISFGDAISLDTHLEVARLTRCLEGVRGILNLHPAYTSVLVDFDPRLRSHAEVEAIVRERIATHEHQPPP
EPRHIEIPVRYGGEFGPDLADVARHTGMSAERVVELHSSAEYLVYFVGFSTCFPYLGGLLPELATPRLAAPRKHVPVGSV
AIGGAQAGIYPLASPGGWRLIGRTSVTLFDRDASPPPLLRMGDRVRFTISREGRA

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=208, Percent_Identity=45.6730769230769, Blast_Score=166, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: 3.5.1.54

Molecular weight: Translated: 23679; Mature: 23548

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRPGSDRSLFISFGDAISLDTHLEVARLTRCLEGVRGILNLHPAYTSVLVDFDPRLRS
CCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH
HAEVEAIVRERIATHEHQPPPEPRHIEIPVRYGGEFGPDLADVARHTGMSAERVVELHSS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHCCC
AEYLVYFVGFSTCFPYLGGLLPELATPRLAAPRKHVPVGSVAIGGAQAGIYPLASPGGWR
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCEE
LIGRTSVTLFDRDASPPPLLRMGDRVRFTISREGRA
EEECEEEEEEECCCCCCHHHCCCCEEEEEEECCCCC
>Mature Secondary Structure 
TIRPGSDRSLFISFGDAISLDTHLEVARLTRCLEGVRGILNLHPAYTSVLVDFDPRLRS
CCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH
HAEVEAIVRERIATHEHQPPPEPRHIEIPVRYGGEFGPDLADVARHTGMSAERVVELHSS
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHCCC
AEYLVYFVGFSTCFPYLGGLLPELATPRLAAPRKHVPVGSVAIGGAQAGIYPLASPGGWR
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCEE
LIGRTSVTLFDRDASPPPLLRMGDRVRFTISREGRA
EEECEEEEEEECCCCCCHHHCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: urea-1-carboxylate; H2O

Specific reaction: urea-1-carboxylate + H2O = 2 CO2 + 2 NH3

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]