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The map label for this gene is ydbJ [H]

Identifier: 116516301

GI number: 116516301

Start: 1283155

End: 1283877

Strand: Reverse

Name: ydbJ [H]

Synonym: SPD_1255

Alternate gene names: 116516301

Gene position: 1283877-1283155 (Counterclockwise)

Preceding gene: 116515450

Following gene: 116515882

Centisome position: 62.75

GC content: 28.77

Gene sequence:

>723_bases
TTGATGAAAATTCTTGTTCAGAATAATCAACCGACTTCAGGTAATATTATAAGCAGTGATAATGTTGGGTATTTAATCGA
AGAACCAAAATTATTTTTATCTAAAACAGGTTTAGAGAATTTAAAATATTTGTCAAATTTATATGGTGTTGACTACAATC
AAGAAATATTTAGAAGTTTGATCCAAGAGTTAGATTTGACTCAGTCTATTAATAAAAAAGTAAAGACCTATTCTTTGGGT
ACAAAACAAAAATTAGCTTTGCTTCTAACTCTCGTTACGGAACCTGATATATTGATTTTAGATGAACCGACTAATGGTTT
AGATATTGAATCATCACAAATAGTTTTATCGGTTCTAAAAAATTTAGCTTTACATGAAAATGTGGGAATTTTAATATCGA
GTCATAAATTAGAAGATATTGAAGAAATTTGTGAGAGGGTTCTTTTCTTGGAGAACGGGCTTTTGACATTTCAAAAAGTA
GGAAAAGATAGTCATAATTTCTTGTTTGAGATAGCTTTTTCATCAGCTACAGATAGAGACATTTTCATTACCAAACAAGA
ATTTGGGGATATTGTTCAGGAAGAGGGACTGAGCATTACTATGTCTGGGAATATTCAAAGTAGTGAGCTTTTTAAATTTT
TTAACGAAAACTCTATTAAAGTAGTTGATTTTGAAACTAAAAAAGAGACGCTTAAAGATATTTATCTAAATCGTTCAAAA
TAA

Upstream 100 bases:

>100_bases
GCATTATGGTCATTCAATCATTCTCAAAGATATAAATTTTGCACTTAACAAGGGTGAAATTGTTGGTCTAGCAGGGAGAA
ATGGAGTTGGTAAGAGTACG

Downstream 100 bases:

>100_bases
AGGAAGGTTATAATCATGAAATTAAATAAATTTAATTTTCTTAAGGAAAATATAAGAAATTTATATTCATCAGGCGTAAT
ATATCTCAGTTTGCTTATCT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MMKILVQNNQPTSGNIISSDNVGYLIEEPKLFLSKTGLENLKYLSNLYGVDYNQEIFRSLIQELDLTQSINKKVKTYSLG
TKQKLALLLTLVTEPDILILDEPTNGLDIESSQIVLSVLKNLALHENVGILISSHKLEDIEEICERVLFLENGLLTFQKV
GKDSHNFLFEIAFSSATDRDIFITKQEFGDIVQEEGLSITMSGNIQSSELFKFFNENSIKVVDFETKKETLKDIYLNRSK

Sequences:

>Translated_240_residues
MMKILVQNNQPTSGNIISSDNVGYLIEEPKLFLSKTGLENLKYLSNLYGVDYNQEIFRSLIQELDLTQSINKKVKTYSLG
TKQKLALLLTLVTEPDILILDEPTNGLDIESSQIVLSVLKNLALHENVGILISSHKLEDIEEICERVLFLENGLLTFQKV
GKDSHNFLFEIAFSSATDRDIFITKQEFGDIVQEEGLSITMSGNIQSSELFKFFNENSIKVVDFETKKETLKDIYLNRSK
>Mature_240_residues
MMKILVQNNQPTSGNIISSDNVGYLIEEPKLFLSKTGLENLKYLSNLYGVDYNQEIFRSLIQELDLTQSINKKVKTYSLG
TKQKLALLLTLVTEPDILILDEPTNGLDIESSQIVLSVLKNLALHENVGILISSHKLEDIEEICERVLFLENGLLTFQKV
GKDSHNFLFEIAFSSATDRDIFITKQEFGDIVQEEGLSITMSGNIQSSELFKFFNENSIKVVDFETKKETLKDIYLNRSK

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=146, Percent_Identity=34.9315068493151, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI30795238, Length=165, Percent_Identity=29.0909090909091, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI27881501, Length=165, Percent_Identity=29.0909090909091, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI27477115, Length=174, Percent_Identity=25.8620689655172, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI45446740, Length=201, Percent_Identity=26.865671641791, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI47078218, Length=201, Percent_Identity=26.865671641791, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI6005701, Length=175, Percent_Identity=26.2857142857143, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI153792144, Length=273, Percent_Identity=23.8095238095238, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI150417984, Length=158, Percent_Identity=30.379746835443, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27262624, Length=180, Percent_Identity=25, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27262626, Length=180, Percent_Identity=25, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI21536376, Length=150, Percent_Identity=29.3333333333333, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI105990541, Length=241, Percent_Identity=24.4813278008299, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI116734710, Length=160, Percent_Identity=30, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1786319, Length=111, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081782, Length=161, Percent_Identity=29.1925465838509, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787089, Length=136, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787792, Length=181, Percent_Identity=27.6243093922652, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=135, Percent_Identity=28.1481481481481, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=135, Percent_Identity=28.1481481481481, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=135, Percent_Identity=28.1481481481481, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=155, Percent_Identity=27.741935483871, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=255, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573571, Length=153, Percent_Identity=30.0653594771242, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573573, Length=153, Percent_Identity=30.0653594771242, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=146, Percent_Identity=26.7123287671233, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571871, Length=169, Percent_Identity=27.2189349112426, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574150, Length=243, Percent_Identity=23.4567901234568, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007328, Length=243, Percent_Identity=23.4567901234568, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27234; Mature: 27234

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKILVQNNQPTSGNIISSDNVGYLIEEPKLFLSKTGLENLKYLSNLYGVDYNQEIFRSL
CEEEEEECCCCCCCCEEECCCCEEEEECCHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHH
IQELDLTQSINKKVKTYSLGTKQKLALLLTLVTEPDILILDEPTNGLDIESSQIVLSVLK
HHHHHHHHHHHHHHEEEECCCHHHHHHHHHEECCCCEEEEECCCCCCCCCHHHHHHHHHH
NLALHENVGILISSHKLEDIEEICERVLFLENGLLTFQKVGKDSHNFLFEIAFSSATDRD
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCCE
IFITKQEFGDIVQEEGLSITMSGNIQSSELFKFFNENSIKVVDFETKKETLKDIYLNRSK
EEEEHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMKILVQNNQPTSGNIISSDNVGYLIEEPKLFLSKTGLENLKYLSNLYGVDYNQEIFRSL
CEEEEEECCCCCCCCEEECCCCEEEEECCHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHH
IQELDLTQSINKKVKTYSLGTKQKLALLLTLVTEPDILILDEPTNGLDIESSQIVLSVLK
HHHHHHHHHHHHHHEEEECCCHHHHHHHHHEECCCCEEEEECCCCCCCCCHHHHHHHHHH
NLALHENVGILISSHKLEDIEEICERVLFLENGLLTFQKVGKDSHNFLFEIAFSSATDRD
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCCE
IFITKQEFGDIVQEEGLSITMSGNIQSSELFKFFNENSIKVVDFETKKETLKDIYLNRSK
EEEEHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]