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The map label for this gene is ybbM [H]

Identifier: 116496018

GI number: 116496018

Start: 2570993

End: 2571754

Strand: Direct

Name: ybbM [H]

Synonym: LSEI_2589

Alternate gene names: 116496018

Gene position: 2570993-2571754 (Clockwise)

Preceding gene: 116496017

Following gene: 116496026

Centisome position: 88.8

GC content: 48.69

Gene sequence:

>762_bases
ATGAGTAATCAGCTCATTGTGTCACCCATCACCTTATTGCTAGCACTTATCTTGGTCTTGATTGCACTAGCGATCAACCT
AAAAGAAGATCTCGGCATGACCAAAGATTTGATTATCGGCGTTGTGCGGGCTGTCATCCAGTTGACTGTTGTTGGTTTCG
TCCTGACCTACATCATCAAAGCCGATACTGTCTGGCTGACGTTGGCCATGATTGCGGTCATCATTTTTAACGCCGCTTGG
AACGCTAAAAAACGCGCCGGGACAATTCCAAATGCGCTCGTGACGAGTTTGTTGGCGATCACAACCGCGACTGGGTTAAC
CCTGGTGATGCTGGTCGCGGTCAAAGCCATCCGTTTTGTCCCATCACAAATCGTCCCAATTTGCGGCATGATCGCCAGCA
ACGTTATGGTGGCAATTGGCTTGGCTTATCGCAGTTTGAATACAGAATTCAATGATTTACGGCAACAGGTCCTTGAACGT
TTGGCACTCGGCGCTGATCTCAAGCAAGCCAGTCAATCGCTCATTGTCAATGCAATTAAAACTGGGATGGCGCCGACGAT
TGATTCAGCAAAAACGGTAGGGTTGGTCAGCTTGCCGGGGATGATGTCGGGGTTGATTTTCGCGGGTATTGATCCCACCA
AAGCCATCATGTATCAGATCATGGTCACCTTTATGTTACTGGGCGCCACCAGTATCGGTAGCTTTATTGCCGTTTACCGC
AGCTATCCACGCTTTTACAATGCCCGTAAACAACTGCGCTAA

Upstream 100 bases:

>100_bases
CAAGGCATCACCTTGATCCGCGTCACTCATGATGAAGGCGAGATTCAGGCCGCGAAACAATTGCTGCGGCTAGTTGCCGG
ACAATTCGAGGAGGCCGCTC

Downstream 100 bases:

>100_bases
AAAAATAATCGTAGAATGAATCATTTGACAACCACATAAAAAACGTTGTGCTCGCATTGGCCATGCGGACACAACGTTTT
TTAAATTGCTTGATTAATAA

Product: ABC-type uncharacterized transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSNQLIVSPITLLLALILVLIALAINLKEDLGMTKDLIIGVVRAVIQLTVVGFVLTYIIKADTVWLTLAMIAVIIFNAAW
NAKKRAGTIPNALVTSLLAITTATGLTLVMLVAVKAIRFVPSQIVPICGMIASNVMVAIGLAYRSLNTEFNDLRQQVLER
LALGADLKQASQSLIVNAIKTGMAPTIDSAKTVGLVSLPGMMSGLIFAGIDPTKAIMYQIMVTFMLLGATSIGSFIAVYR
SYPRFYNARKQLR

Sequences:

>Translated_253_residues
MSNQLIVSPITLLLALILVLIALAINLKEDLGMTKDLIIGVVRAVIQLTVVGFVLTYIIKADTVWLTLAMIAVIIFNAAW
NAKKRAGTIPNALVTSLLAITTATGLTLVMLVAVKAIRFVPSQIVPICGMIASNVMVAIGLAYRSLNTEFNDLRQQVLER
LALGADLKQASQSLIVNAIKTGMAPTIDSAKTVGLVSLPGMMSGLIFAGIDPTKAIMYQIMVTFMLLGATSIGSFIAVYR
SYPRFYNARKQLR
>Mature_252_residues
SNQLIVSPITLLLALILVLIALAINLKEDLGMTKDLIIGVVRAVIQLTVVGFVLTYIIKADTVWLTLAMIAVIIFNAAWN
AKKRAGTIPNALVTSLLAITTATGLTLVMLVAVKAIRFVPSQIVPICGMIASNVMVAIGLAYRSLNTEFNDLRQQVLERL
ALGADLKQASQSLIVNAIKTGMAPTIDSAKTVGLVSLPGMMSGLIFAGIDPTKAIMYQIMVTFMLLGATSIGSFIAVYRS
YPRFYNARKQLR

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=242, Percent_Identity=54.9586776859504, Blast_Score=266, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 27210; Mature: 27079

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQLIVSPITLLLALILVLIALAINLKEDLGMTKDLIIGVVRAVIQLTVVGFVLTYIIK
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADTVWLTLAMIAVIIFNAAWNAKKRAGTIPNALVTSLLAITTATGLTLVMLVAVKAIRFV
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSQIVPICGMIASNVMVAIGLAYRSLNTEFNDLRQQVLERLALGADLKQASQSLIVNAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TGMAPTIDSAKTVGLVSLPGMMSGLIFAGIDPTKAIMYQIMVTFMLLGATSIGSFIAVYR
HCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYPRFYNARKQLR
HHHHHHHHHHCCC
>Mature Secondary Structure 
SNQLIVSPITLLLALILVLIALAINLKEDLGMTKDLIIGVVRAVIQLTVVGFVLTYIIK
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADTVWLTLAMIAVIIFNAAWNAKKRAGTIPNALVTSLLAITTATGLTLVMLVAVKAIRFV
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSQIVPICGMIASNVMVAIGLAYRSLNTEFNDLRQQVLERLALGADLKQASQSLIVNAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TGMAPTIDSAKTVGLVSLPGMMSGLIFAGIDPTKAIMYQIMVTFMLLGATSIGSFIAVYR
HCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYPRFYNARKQLR
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]