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The map label for this gene is yciB [H]

Identifier: 116495984

GI number: 116495984

Start: 2532351

End: 2533055

Strand: Direct

Name: yciB [H]

Synonym: LSEI_2553

Alternate gene names: 116495984

Gene position: 2532351-2533055 (Clockwise)

Preceding gene: 116495983

Following gene: 116495985

Centisome position: 87.47

GC content: 45.11

Gene sequence:

>705_bases
GTGAAACGTATCACTCGTTTTTTCGATCAGATCGCGGCCAGCATCCACTTTTTTAAGACACATCGTCTCAAGCGCAATTA
TCGACGAGCACTTTTATTCTTCGCGATATTGTTGCCAGTTTGTGTTGTCGCAATTATAGCAGGTCAACGGTTACATCAGC
CGACACCGTCAAGTTCGAAAGCCGCTATCGCTCTATCAACCACAAAAAAGAAACAACAACGTCACAAGGCCACCAGTAAT
AAAACCAAGGTACATACAGCCCCGAAGAACATTGACTGGACAGCACCTTCCGAGAAACAGGCTTATCCCGACCTCACCCA
GCATCCGAACATTACTTTAGATGTCAATCTAAAAAAGCAACGGGTTTTTATCAAGGAAGGCGACAAAACGCTATACACGA
TGTATGCGTCTACTGGTATTGATGACTCAACCCCACGAGGTGATTTTGCGATTCAAGACGAACGGGGTTATGAATTTTTC
AATCCAAACGAACAAATGGGCGCCCATTATTATACAAGCTTTTATCTGCATGGAACTTATCTTTTTCATACCGTCCCGAC
AGATGTCGGCGGACAATACATCAAAAACGAGGCGGCTAAGCTTGGCAAAGAGCCTGGCTCTCATGGCTGCGTTCGGTTGA
GTATTGCGGATGCTAAGTGGATATTCGAGCATGTGCCAACAGGGACGCCAGTTAAAGTGTATTAA

Upstream 100 bases:

>100_bases
GCGAAAGGTCTTTGCTGTCCACCTCATCAAAAATCCACTATAATATGGGATAACGCATTGCTTGTTGTTATCGCGCTGCA
TACTAAACGGGAGGAATAAC

Downstream 100 bases:

>100_bases
ACAAATAATGACGCAAAATGCCGTCCGACAACGCGATACATTGTTAAAAGGCATTTTACGACATTTAGGCATTCTACATC
AATTTCATTAAAAGTCTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MKRITRFFDQIAASIHFFKTHRLKRNYRRALLFFAILLPVCVVAIIAGQRLHQPTPSSSKAAIALSTTKKKQQRHKATSN
KTKVHTAPKNIDWTAPSEKQAYPDLTQHPNITLDVNLKKQRVFIKEGDKTLYTMYASTGIDDSTPRGDFAIQDERGYEFF
NPNEQMGAHYYTSFYLHGTYLFHTVPTDVGGQYIKNEAAKLGKEPGSHGCVRLSIADAKWIFEHVPTGTPVKVY

Sequences:

>Translated_234_residues
MKRITRFFDQIAASIHFFKTHRLKRNYRRALLFFAILLPVCVVAIIAGQRLHQPTPSSSKAAIALSTTKKKQQRHKATSN
KTKVHTAPKNIDWTAPSEKQAYPDLTQHPNITLDVNLKKQRVFIKEGDKTLYTMYASTGIDDSTPRGDFAIQDERGYEFF
NPNEQMGAHYYTSFYLHGTYLFHTVPTDVGGQYIKNEAAKLGKEPGSHGCVRLSIADAKWIFEHVPTGTPVKVY
>Mature_234_residues
MKRITRFFDQIAASIHFFKTHRLKRNYRRALLFFAILLPVCVVAIIAGQRLHQPTPSSSKAAIALSTTKKKQQRHKATSN
KTKVHTAPKNIDWTAPSEKQAYPDLTQHPNITLDVNLKKQRVFIKEGDKTLYTMYASTGIDDSTPRGDFAIQDERGYEFF
NPNEQMGAHYYTSFYLHGTYLFHTVPTDVGGQYIKNEAAKLGKEPGSHGCVRLSIADAKWIFEHVPTGTPVKVY

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 26573; Mature: 26573

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRITRFFDQIAASIHFFKTHRLKRNYRRALLFFAILLPVCVVAIIAGQRLHQPTPSSSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCC
AAIALSTTKKKQQRHKATSNKTKVHTAPKNIDWTAPSEKQAYPDLTQHPNITLDVNLKKQ
EEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEE
RVFIKEGDKTLYTMYASTGIDDSTPRGDFAIQDERGYEFFNPNEQMGAHYYTSFYLHGTY
EEEEECCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHCCCEEEEEEEEEEEE
LFHTVPTDVGGQYIKNEAAKLGKEPGSHGCVRLSIADAKWIFEHVPTGTPVKVY
EEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEEC
>Mature Secondary Structure
MKRITRFFDQIAASIHFFKTHRLKRNYRRALLFFAILLPVCVVAIIAGQRLHQPTPSSSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCC
AAIALSTTKKKQQRHKATSNKTKVHTAPKNIDWTAPSEKQAYPDLTQHPNITLDVNLKKQ
EEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEE
RVFIKEGDKTLYTMYASTGIDDSTPRGDFAIQDERGYEFFNPNEQMGAHYYTSFYLHGTY
EEEEECCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHCCCEEEEEEEEEEEE
LFHTVPTDVGGQYIKNEAAKLGKEPGSHGCVRLSIADAKWIFEHVPTGTPVKVY
EEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]