| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is ycbN [H]
Identifier: 116495784
GI number: 116495784
Start: 2329856
End: 2330734
Strand: Direct
Name: ycbN [H]
Synonym: LSEI_2332
Alternate gene names: 116495784
Gene position: 2329856-2330734 (Clockwise)
Preceding gene: 116495783
Following gene: 116495785
Centisome position: 80.47
GC content: 46.53
Gene sequence:
>879_bases ATGGAATTGCAACTGCAAAATCTTGCATTAAGTTTTAAAAACAAACCCAACGTCATTCACGACATCAGCCTCACCATGAA TGGCGGATCAATCGTCGGGATTGTCGCCCCCAATGGTACCGGCAAAACCACCTTGCTGCGCTTGATTCTCAATGATCTAA AACCACAAGCAGGCAAAGTGCTGGTAGATGGTAAAAGTTATGGTAGTCAAAAACAAAGCCTTGCGCTGCACCGGCAGATG TGCCTTTTCCCAGTTCAAGATGATCTTTATCCAGATTTATCCGGCAAAGCGCACCTCGAGTATTATGCCAAGCTGTGGCA CAATCGTTCCAAAAGCGTGAAACAGATTATCAATGTGCTCGACATGCGGGACTACATCAATCAACCGGTGCGTACCTATT CAATGGGCATGAAACAGCGGTTATGTTTTGGTATGGTCATGGCGGCCAACACCCCGATCATGCTACTGGATGAATTTATG AACGGACTTGACACGATCAATGTTGCGCGAATGTCTCGCATTTTGCGCGGCTTACGCGCAGAAGGCAAGCTGATTATCAC GGTCTCCCACTTGCTGAACAATCTGCAAGGGTACGCCGACCTCATCTACTTCATGCGTGACGGGAAGATCATCAAAACCA TCGACCAACACGAACAGCAGCCTTTATATGTGCAGGTTGCTGAAGAAAATGCCAGCCGTTTACCACGTATGCCGTGGGAA CATTATCCCAACGGTATGTTGGTGCTGCCAATCCAAAAATTGCCAGGTGAGCATTTCAATCAACTACTGTTGGGTTTAGC AGCCCACCATATTCCCTTCAAACTTGGGCCACTCGATCTTGATACTTATTTCAACGAATTTTACGAAACTGATCAATGA
Upstream 100 bases:
>100_bases TCGTGACACATCGCCGACATGCTGCGACGGTTAAATAGAGCGTGAGCTGGCGCGGTTAGAAACCAGCGTGATGCGTACGC ATTTTACAGGAGGGTACATC
Downstream 100 bases:
>100_bases AATAAAAACAACATAACGTAACTCATGCCGCTGTTTCTTATTCATTAGTGGCCGACAATATAACTAAATTTATTATTCAG GCGAACGAATGCCGCAAGTT
Product: ABC-type multidrug transport system, ATPase component
Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MELQLQNLALSFKNKPNVIHDISLTMNGGSIVGIVAPNGTGKTTLLRLILNDLKPQAGKVLVDGKSYGSQKQSLALHRQM CLFPVQDDLYPDLSGKAHLEYYAKLWHNRSKSVKQIINVLDMRDYINQPVRTYSMGMKQRLCFGMVMAANTPIMLLDEFM NGLDTINVARMSRILRGLRAEGKLIITVSHLLNNLQGYADLIYFMRDGKIIKTIDQHEQQPLYVQVAEENASRLPRMPWE HYPNGMLVLPIQKLPGEHFNQLLLGLAAHHIPFKLGPLDLDTYFNEFYETDQ
Sequences:
>Translated_292_residues MELQLQNLALSFKNKPNVIHDISLTMNGGSIVGIVAPNGTGKTTLLRLILNDLKPQAGKVLVDGKSYGSQKQSLALHRQM CLFPVQDDLYPDLSGKAHLEYYAKLWHNRSKSVKQIINVLDMRDYINQPVRTYSMGMKQRLCFGMVMAANTPIMLLDEFM NGLDTINVARMSRILRGLRAEGKLIITVSHLLNNLQGYADLIYFMRDGKIIKTIDQHEQQPLYVQVAEENASRLPRMPWE HYPNGMLVLPIQKLPGEHFNQLLLGLAAHHIPFKLGPLDLDTYFNEFYETDQ >Mature_292_residues MELQLQNLALSFKNKPNVIHDISLTMNGGSIVGIVAPNGTGKTTLLRLILNDLKPQAGKVLVDGKSYGSQKQSLALHRQM CLFPVQDDLYPDLSGKAHLEYYAKLWHNRSKSVKQIINVLDMRDYINQPVRTYSMGMKQRLCFGMVMAANTPIMLLDEFM NGLDTINVARMSRILRGLRAEGKLIITVSHLLNNLQGYADLIYFMRDGKIIKTIDQHEQQPLYVQVAEENASRLPRMPWE HYPNGMLVLPIQKLPGEHFNQLLLGLAAHHIPFKLGPLDLDTYFNEFYETDQ
Specific function: Part Of The Binding-Protein-Dependent Transport System For Citrate-Dependent Iron(III). Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=207, Percent_Identity=27.0531400966184, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=28.0193236714976, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI153792144, Length=209, Percent_Identity=27.2727272727273, Blast_Score=99, Evalue=6e-21, Organism=Homo sapiens, GI27262624, Length=210, Percent_Identity=26.6666666666667, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI27262626, Length=210, Percent_Identity=26.6666666666667, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI27436953, Length=207, Percent_Identity=26.5700483091787, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI116734710, Length=197, Percent_Identity=26.3959390862944, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=22.6851851851852, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=22.6851851851852, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31657092, Length=199, Percent_Identity=25.6281407035176, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI46592964, Length=186, Percent_Identity=28.494623655914, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI46592978, Length=186, Percent_Identity=28.494623655914, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI46592971, Length=186, Percent_Identity=28.494623655914, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI46592956, Length=186, Percent_Identity=28.494623655914, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI46592915, Length=186, Percent_Identity=28.494623655914, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI46592898, Length=186, Percent_Identity=28.494623655914, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=24.5283018867925, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI105990541, Length=184, Percent_Identity=25.5434782608696, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI27881501, Length=198, Percent_Identity=24.2424242424242, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI30795238, Length=198, Percent_Identity=24.2424242424242, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1790739, Length=220, Percent_Identity=33.1818181818182, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI87081782, Length=202, Percent_Identity=28.2178217821782, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788210, Length=224, Percent_Identity=25.8928571428571, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=27.027027027027, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=27.7272727272727, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786803, Length=218, Percent_Identity=28.8990825688073, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=25.8928571428571, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI87082268, Length=218, Percent_Identity=25.6880733944954, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081709, Length=215, Percent_Identity=24.6511627906977, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081791, Length=232, Percent_Identity=25, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=26.3888888888889, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790162, Length=225, Percent_Identity=24.4444444444444, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787029, Length=214, Percent_Identity=24.2990654205607, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787792, Length=268, Percent_Identity=24.6268656716418, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788002, Length=233, Percent_Identity=25.7510729613734, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=22.0720720720721, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789586, Length=227, Percent_Identity=27.3127753303965, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786398, Length=261, Percent_Identity=22.2222222222222, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789032, Length=203, Percent_Identity=25.1231527093596, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1786319, Length=214, Percent_Identity=24.2990654205607, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17565586, Length=198, Percent_Identity=23.7373737373737, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71983510, Length=202, Percent_Identity=24.7524752475248, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983523, Length=201, Percent_Identity=24.8756218905473, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983516, Length=201, Percent_Identity=24.8756218905473, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115533608, Length=213, Percent_Identity=23.0046948356808, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17510237, Length=200, Percent_Identity=24, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17552010, Length=226, Percent_Identity=24.3362831858407, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992290, Length=234, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17565938, Length=218, Percent_Identity=22.4770642201835, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115532730, Length=211, Percent_Identity=28.436018957346, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573573, Length=202, Percent_Identity=25.2475247524752, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI28573571, Length=202, Percent_Identity=25.2475247524752, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI28574150, Length=195, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI116007328, Length=195, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=24.2990654205607, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=24.2990654205607, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24666092, Length=212, Percent_Identity=24.5283018867925, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24643674, Length=212, Percent_Identity=23.1132075471698, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI221512771, Length=196, Percent_Identity=23.9795918367347, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24648314, Length=213, Percent_Identity=23.4741784037559, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574533, Length=205, Percent_Identity=24.8780487804878, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574259, Length=200, Percent_Identity=28.5, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076682, Length=183, Percent_Identity=24.5901639344262, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI161076684, Length=183, Percent_Identity=24.5901639344262, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581617, Length=183, Percent_Identity=24.5901639344262, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581615, Length=183, Percent_Identity=24.5901639344262, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24648279, Length=205, Percent_Identity=29.2682926829268, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI161078426, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI19920532, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580930, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI85816269, Length=227, Percent_Identity=25.1101321585903, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24580553, Length=227, Percent_Identity=25.1101321585903, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI85724864, Length=227, Percent_Identity=25.1101321585903, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580555, Length=227, Percent_Identity=25.1101321585903, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI21357907, Length=228, Percent_Identity=26.7543859649123, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 33217; Mature: 33217
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELQLQNLALSFKNKPNVIHDISLTMNGGSIVGIVAPNGTGKTTLLRLILNDLKPQAGKV CCEEHHHHHEECCCCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE LVDGKSYGSQKQSLALHRQMCLFPVQDDLYPDLSGKAHLEYYAKLWHNRSKSVKQIINVL EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH DMRDYINQPVRTYSMGMKQRLCFGMVMAANTPIMLLDEFMNGLDTINVARMSRILRGLRA HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC EGKLIITVSHLLNNLQGYADLIYFMRDGKIIKTIDQHEQQPLYVQVAEENASRLPRMPWE CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCEEEEEECCHHHHCCCCCHH HYPNGMLVLPIQKLPGEHFNQLLLGLAAHHIPFKLGPLDLDTYFNEFYETDQ HCCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCC >Mature Secondary Structure MELQLQNLALSFKNKPNVIHDISLTMNGGSIVGIVAPNGTGKTTLLRLILNDLKPQAGKV CCEEHHHHHEECCCCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE LVDGKSYGSQKQSLALHRQMCLFPVQDDLYPDLSGKAHLEYYAKLWHNRSKSVKQIINVL EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH DMRDYINQPVRTYSMGMKQRLCFGMVMAANTPIMLLDEFMNGLDTINVARMSRILRGLRA HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC EGKLIITVSHLLNNLQGYADLIYFMRDGKIIKTIDQHEQQPLYVQVAEENASRLPRMPWE CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCEEEEEECCHHHHCCCCCHH HYPNGMLVLPIQKLPGEHFNQLLLGLAAHHIPFKLGPLDLDTYFNEFYETDQ HCCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]
Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377; 7704254 [H]